View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_84 (Length: 235)
Name: NF6178_low_84
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_84 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 395970 - 396172
Alignment:
| Q |
17 |
caacactggcattctttggagttggagtgaacttggttctgttcctaacgagagtccttcgtcaagacagtgccgaggctgctaataatgtcagcttgtg |
116 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
395970 |
caacactagcattctttggagttggagtgaacttggttctgttcctaacgagagtccttcgtcaagacagtgccgaggctgctaataatgtcagcttgtg |
396069 |
T |
|
| Q |
117 |
gactggaactgtttacatattttcactcttgggagcattccttagtgattcttattggggaagatacttaacatgcgctatctttcagctcttctttgtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
396070 |
gactggaactgtttacatattttcactcttgggagcattccttagtgattcttattggggaagatacttaacatgcgctatctttcagctcttctttgtt |
396169 |
T |
|
| Q |
217 |
ctg |
219 |
Q |
| |
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||| |
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| T |
396170 |
ctg |
396172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 3804740 - 3804538
Alignment:
| Q |
17 |
caacactggcattctttggagttggagtgaacttggttctgttcctaacgagagtccttcgtcaagacagtgccgaggctgctaataatgtcagcttgtg |
116 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
3804740 |
caacactggcattctttggtgttggagtgaacttggttctgttcctaacaagagtccttcgtcaagacagtgccgaggctgctaacaatgtcagcaagtg |
3804641 |
T |
|
| Q |
117 |
gactggaactgtttacatattttcactcttgggagcattccttagtgattcttattggggaagatacttaacatgcgctatctttcagctcttctttgtt |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| || |||||| |
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| T |
3804640 |
gactggaactgtttacattttttcactcttgggagcattccttagtgattcttattggggaagatacttaacttgcactatctttcagcttttttttgtt |
3804541 |
T |
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| Q |
217 |
ctg |
219 |
Q |
| |
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||| |
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| T |
3804540 |
ctg |
3804538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 28 - 218
Target Start/End: Complemental strand, 52811352 - 52811162
Alignment:
| Q |
28 |
ttctttggagttggagtgaacttggttctgttcctaacgagagtccttcgtcaagacagtgccgaggctgctaataatgtcagcttgtggactggaactg |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |||||| |||||||||||||| ||| |||||| ||||| | |
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| T |
52811352 |
ttctttggagttggagtgaacttggttctgttcctaactagagttcttggtcaagacaatgccgaagctgctaataatgtgagcaagtggacaggaaccg |
52811253 |
T |
|
| Q |
128 |
tttacatattttcactcttgggagcattccttagtgattcttattggggaagatacttaacatgcgctatctttcagctcttctttgttct |
218 |
Q |
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||||||| || ||| | | |||||||| || ||||| ||||||||||| |||||||||| ||| | |||||||| || ||||||||||| |
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| T |
52811252 |
tttacatgttctcattggttggagcatttctcagtgactcttattggggtcgatacttaacctgcacaatctttcaacttttctttgttct |
52811162 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 203
Target Start/End: Original strand, 40742320 - 40742498
Alignment:
| Q |
25 |
gcattctttggagttggagtgaacttggttctgttcctaacgagagtccttcgtcaagacagtgccgaggctgctaataatgtcagcttgtggactggaa |
124 |
Q |
| |
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|||||||||||||||||||||||| | ||||||||| | || || || | ||||||| | ||| | |||||||| ||||||||| ||||||||| | |
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| T |
40742320 |
gcattctttggagttggagtgaacctagttctgttcttgacaagggtgttgggtcaagataatgctgctgctgctaacaatgtcagcaagtggactggca |
40742419 |
T |
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| Q |
125 |
ctgtttacatattttcactcttgggagcattccttagtgattcttattggggaagatacttaacatgcgctatctttca |
203 |
Q |
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| T |
40742420 |
cagtttacatcttctctcttgttggtgctttccttagtgattcttattggggaagatacaaaacatgtgctatctttca |
40742498 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 4709943 - 4709854
Alignment:
| Q |
115 |
tggactggaactgtttacatattttcactcttgggagcattccttagtgattcttattggggaagatacttaacatgcgctatctttcag |
204 |
Q |
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|||||||||||||||||||| || || || ||||||| ||||| ||||| ||||||||||||||||| |||||| ||| |||||||| |
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| T |
4709943 |
tggactggaactgtttacatcttctctctagtgggagctttcctaagtgactcttattggggaagatataaaacatgtgctgtctttcag |
4709854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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