View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6178_low_85 (Length: 232)

Name: NF6178_low_85
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6178_low_85
NF6178_low_85
[»] chr2 (2 HSPs)
chr2 (90-155)||(1090864-1090929)
chr2 (91-155)||(12138867-12138931)
[»] chr8 (3 HSPs)
chr8 (91-155)||(31820103-31820167)
chr8 (91-155)||(37746677-37746741)
chr8 (91-155)||(39863860-39863924)
[»] chr4 (4 HSPs)
chr4 (91-155)||(25489872-25489936)
chr4 (91-155)||(36870620-36870684)
chr4 (91-155)||(23161480-23161544)
chr4 (91-155)||(53139472-53139536)
[»] chr7 (1 HSPs)
chr7 (91-155)||(21125333-21125397)
[»] chr5 (3 HSPs)
chr5 (91-155)||(38977940-38978004)
chr5 (91-152)||(3306818-3306879)
chr5 (91-152)||(18910368-18910429)
[»] chr3 (1 HSPs)
chr3 (91-155)||(2444760-2444824)
[»] chr1 (1 HSPs)
chr1 (91-155)||(26615457-26615521)


Alignment Details
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 1090929 - 1090864
Alignment:
Q  90 acatttgagatcaatagtaaacagctactcatcataacatacaacaaaaatggttaatgagtagtt 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1090929 acatttgagatcaatagtaaacagctactcatcataacatacaacaaaaatggttaatgagtagtt 1090864  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 12138931 - 12138867
Alignment:
Q  91 catttgagatcaatagtaaacagctactcatcataacatacaacaaaaatggttaatgagtagtt 155  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  12138931 catttgagatcaatagtaaacagctacccatcataccatacaacaaaaatggttaatgagtagtt 12138867  T

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Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 31820167 - 31820103
Alignment:
Q  91 catttgagatcaatagtaaacagctactcatcataacatacaacaaaaatggttaatgagtagtt 155  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31820167 catttgagatcaatagtaaacagctactcatcataccatacaacaaaaatggttaatgagtagtt 31820103  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 37746741 - 37746677
Alignment:
Q  91 catttgagatcaatagtaaacagctactcatcataacatacaacaaaaatggttaatgagtagtt 155  Q
    ||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||    
T  37746741 catttgagatcaatagtaaacagctacccatcttaccatacaacaaaaatggttaatgagtagtt 37746677  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 39863860 - 39863924
Alignment:
Q  91 catttgagatcaatagtaaacagctactcatcataacatacaacaaaaatggttaatgagtagtt 155  Q
    ||||||||||||| |||||||| |||| ||||||| |||||||||||||||||||||||||||||    
T  39863860 catttgagatcaacagtaaacatctacccatcataccatacaacaaaaatggttaatgagtagtt 39863924  T

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Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 25489872 - 25489936
Alignment:
Q  91 catttgagatcaatagtaaacagctactcatcataacatacaacaaaaatggttaatgagtagtt 155  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25489872 catttgagatcaatagtaaacagctactcatcataccatacaacaaaaatggttaatgagtagtt 25489936  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 36870620 - 36870684
Alignment:
Q  91 catttgagatcaatagtaaacagctactcatcataacatacaacaaaaatggttaatgagtagtt 155  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  36870620 catttgagatcaatagtaaacagctactcatcatactatacaacaaaaatggttaatgagtagtt 36870684  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 23161544 - 23161480
Alignment:
Q  91 catttgagatcaatagtaaacagctactcatcataacatacaacaaaaatggttaatgagtagtt 155  Q
    ||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  23161544 catttgaaatcaatagtaaacagctacccatcataccatacaacaaaaatggttaatgagtagtt 23161480  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 53139536 - 53139472
Alignment:
Q  91 catttgagatcaatagtaaacagctactcatcataacatacaacaaaaatggttaatgagtagtt 155  Q
    ||||||||||||||||||||||| ||| ||||||  |||||||||||||||||||||||||||||    
T  53139536 catttgagatcaatagtaaacagttacccatcattccatacaacaaaaatggttaatgagtagtt 53139472  T

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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 21125333 - 21125397
Alignment:
Q  91 catttgagatcaatagtaaacagctactcatcataacatacaacaaaaatggttaatgagtagtt 155  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  21125333 catttgagatcaatagtaaacagctactcattataccatacaacaaaaatggttaatgagtagtt 21125397  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 38978004 - 38977940
Alignment:
Q  91 catttgagatcaatagtaaacagctactcatcataacatacaacaaaaatggttaatgagtagtt 155  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  38978004 catttgagatcaatagtaaacatctactcatcataccatacaacaaaaatggttaatgagtagtt 38977940  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 3306879 - 3306818
Alignment:
Q  91 catttgagatcaatagtaaacagctactcatcataacatacaacaaaaatggttaatgagta 152  Q
    |||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  3306879 catttgagatcaatagtaaacaactaatcatcataccatacaacaaaaatggttaatgagta 3306818  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 18910429 - 18910368
Alignment:
Q  91 catttgagatcaatagtaaacagctactcatcataacatacaacaaaaatggttaatgagta 152  Q
    ||||||||||||| |||||||| |||||||||||| |||| |||||||||||||||| ||||    
T  18910429 catttgagatcaacagtaaacaactactcatcataccatagaacaaaaatggttaataagta 18910368  T

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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 2444824 - 2444760
Alignment:
Q  91 catttgagatcaatagtaaacagctactcatcataacatacaacaaaaatggttaatgagtagtt 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  2444824 catttgagatcaatagtaaacagctactcatcataacatacaacaaaaatgatcaatgagtagtt 2444760  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 26615457 - 26615521
Alignment:
Q  91 catttgagatcaatagtaaacagctactcatcataacatacaacaaaaatggttaatgagtagtt 155  Q
    ||||||||||||||| || ||||||||||||||||  ||||||||||||||||||||||||||||    
T  26615457 catttgagatcaataatagacagctactcatcatactatacaacaaaaatggttaatgagtagtt 26615521  T

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