View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_88 (Length: 225)
Name: NF6178_low_88
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_88 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 41842112 - 41842009
Alignment:
| Q |
18 |
atttctttatcatttgataatcattccgtttctttatcaattaaattattctatcgatcaatttctattccttctatcttcccgaatgttatcgatttgt |
117 |
Q |
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| T |
41842112 |
atttctttatcatttgataatcattccgtttctttatcaattaaattattctatcgatcaatttctattccttctatcttccagaatgttatcgatttgt |
41842013 |
T |
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| Q |
118 |
cttc |
121 |
Q |
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|||| |
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| T |
41842012 |
cttc |
41842009 |
T |
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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 35781579 - 35781523
Alignment:
| Q |
19 |
tttctttatcatttgataatcattccgtttctttatcaattaaattattctatcgat |
75 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35781579 |
tttctttatcatttgataatcattccgtttctttatcaattaaatcattctatcgat |
35781523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 4889914 - 4889873
Alignment:
| Q |
19 |
tttctttatcatttgataatcattccgtttctttatcaatta |
60 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4889914 |
tttctttatcatttgataatcattccatttctttatcaatta |
4889873 |
T |
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