View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_9 (Length: 515)
Name: NF6178_low_9
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 509
Target Start/End: Complemental strand, 43129675 - 43129181
Alignment:
| Q |
16 |
actttttactttaaaattgatcaaaaccgaacaatttataaaccgaacaatttactctcctattggcctatatcacatgtcaccattttctatattggat |
115 |
Q |
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| T |
43129675 |
actttttactttaaaattgatcaaaacctaacaatttgtaaaccgaacaatttagtctcttattggcctatatcacatgtcaccattttctatattcgat |
43129576 |
T |
|
| Q |
116 |
cccttgaccccaatttgttcggtctcaaggaacaattttaaaatcaaatacaattatcaaattttgagagtattgatagtaa--nnnnnnnnccttcttt |
213 |
Q |
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| T |
43129575 |
cccttgatcccaatttgttcggtctcaaggaacaattttaaaatcaaatacaattatcaaattttgagagtattgatagtaattttattttttatttttt |
43129476 |
T |
|
| Q |
214 |
ctggtgacagaaacgatgactaaacaaggaggtgatgatcatggttgcagctatcagaatcgaagtaacaaagacaacaacaaaaatgctgtccatgaag |
313 |
Q |
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| T |
43129475 |
ctggtgacagaaacgatgactaaacaaggaggtgatgatcatggttgcagctatcagaatgaaagtaacaaagacaacaacaaaaatgctgtccatgaag |
43129376 |
T |
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| Q |
314 |
gctcaacgaaggctcagnnnnnnnnnnnnnnnnngggctcaaaagggaagaatggtggctcagtgaaggtgaagaaggaggaggaatgctacgatccttc |
413 |
Q |
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| T |
43129375 |
gctcaacgaaggctcagaaaagaaaaaagaaaaagggctcaaaagggaagaatggtggctcagtgaaggtgaagaaggaggaggaatgctacgatccttc |
43129276 |
T |
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| Q |
414 |
actgccagctgggataaatttacccatggagtggacttactaagccaacaattctaagggctccattttgaaggcaatgaaagtgagaataatcta |
509 |
Q |
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| T |
43129275 |
actgccagctgggataaatttacccatggagtggacttactaagccaacaattctaa-ggctccattttgaaggcaatgaaagtgagaataatcta |
43129181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 463
Target Start/End: Complemental strand, 43139595 - 43139484
Alignment:
| Q |
351 |
ctcaaaagggaagaatggtggctcagtgaaggtgaagaaggaggaggaatgctacgatccttcactgccagctgggataaatttacccatggagtggact |
450 |
Q |
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|||||||||||||||||||| ||||| ||||||||| ||| |||||||||| | |||| ||| ||||| |||| ||| |||||||| |||||||||| |
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| T |
43139595 |
ctcaaaagggaagaatggtgactcagagaaggtgaa-aagaaggaggaatgtcatgatcattctctgcctcctggaatagttttacccacggagtggact |
43139497 |
T |
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| Q |
451 |
tactaagccaaca |
463 |
Q |
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|||||| |||||| |
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| T |
43139496 |
tactaatccaaca |
43139484 |
T |
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