View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6179_low_1 (Length: 597)

Name: NF6179_low_1
Description: NF6179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6179_low_1
NF6179_low_1
[»] chr4 (19 HSPs)
chr4 (251-578)||(553149-553477)
chr4 (88-256)||(552679-552847)
chr4 (384-550)||(55505234-55505400)
chr4 (388-535)||(640723-640870)
chr4 (12-69)||(552566-552623)
chr4 (278-549)||(546611-546882)
chr4 (450-535)||(1545643-1545728)
chr4 (455-547)||(55908860-55908952)
chr4 (443-549)||(1524613-1524719)
chr4 (122-183)||(546489-546550)
chr4 (485-548)||(644736-644799)
chr4 (485-548)||(12121588-12121651)
chr4 (485-544)||(558403-558462)
chr4 (485-532)||(570256-570303)
chr4 (464-549)||(566073-566158)
chr4 (464-535)||(370803-370875)
chr4 (384-480)||(1600335-1600431)
chr4 (466-546)||(8184163-8184243)
chr4 (501-549)||(53761899-53761947)
[»] chr3 (5 HSPs)
chr3 (391-549)||(51113911-51114069)
chr3 (412-535)||(514872-514995)
chr3 (444-549)||(51121023-51121128)
chr3 (14-67)||(51114421-51114477)
chr3 (485-543)||(1657156-1657214)
[»] chr2 (3 HSPs)
chr2 (455-547)||(1037796-1037888)
chr2 (485-549)||(45245215-45245279)
chr2 (464-541)||(44575633-44575710)
[»] chr6 (9 HSPs)
chr6 (464-538)||(28934933-28935007)
chr6 (492-549)||(6603332-6603389)
chr6 (492-535)||(10579881-10579924)
chr6 (481-549)||(6394765-6394833)
chr6 (492-556)||(14820605-14820669)
chr6 (493-528)||(12102219-12102254)
chr6 (494-535)||(6415880-6415921)
chr6 (495-531)||(6597040-6597076)
chr6 (389-549)||(9411164-9411324)
[»] chr8 (5 HSPs)
chr8 (326-578)||(32151044-32151299)
chr8 (485-532)||(21235463-21235510)
chr8 (452-558)||(27922380-27922486)
chr8 (501-552)||(18315400-18315451)
chr8 (414-523)||(5767811-5767920)
[»] scaffold0295 (1 HSPs)
scaffold0295 (462-532)||(771-841)
[»] chr1 (4 HSPs)
chr1 (464-548)||(9580953-9581037)
chr1 (450-524)||(9586509-9586583)
chr1 (507-549)||(7554415-7554457)
chr1 (495-557)||(19468621-19468683)
[»] chr5 (4 HSPs)
chr5 (508-558)||(17205527-17205577)
chr5 (492-558)||(32267387-32267453)
chr5 (494-538)||(20478223-20478267)
chr5 (510-558)||(41901656-41901704)
[»] chr7 (3 HSPs)
chr7 (501-558)||(10170202-10170259)
chr7 (501-558)||(10177727-10177784)
chr7 (508-549)||(10614521-10614562)


Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 251 - 578
Target Start/End: Original strand, 553149 - 553477
Alignment:
Q  251 catatttataaaa-gaaattaatttctcatctgaaaacaataaagaacttacatttcggagtttatactccaacaaagcagtttcaaactactacgaaac 349  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  553149 catatttataaaaagaaattaatttctcatctgaaaacaataaagaacttacatttcggagtttatactccaacaaagcagtttcaaactactacgaaac 553248  T
Q  350 atagcatccatggtgcaagaagagtttctctgtatcactcaaatcaaaaccaggtggagctcctatctttcttaatgatgtccgtgaatgtaccattgag 449  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  553249 atagcatccatggtgcaagaagagtttctccgtatcactcaaatcaaaaccaggtggagctcctatctttctcaatgatgtccgtgaatgtaccattgag 553348  T
Q  450 gcaacaacatttgcatgcactttatcacaaccccccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacat 549  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  553349 gcaacaacatttgcatgcactttatcacaaccccccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacat 553448  T
Q  550 cactacaataaaacaacaacagttgcaaa 578  Q
    |||||||||||||||||||||||||||||    
T  553449 cactacaataaaacaacaacagttgcaaa 553477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 88 - 256
Target Start/End: Original strand, 552679 - 552847
Alignment:
Q  88 ttgatataattgagtggtgaattaattagttcagttcagtaaatgatgttggggatttcaaatcacatgcaggtctacactatctcttattctcttacat 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  552679 ttgatataattgagtggtgaattaattagttcagttcagtaaatgatgttggggatttcaaatcacatgcaggtctacactatctcttattctcttacat 552778  T
Q  188 atatcgtagaacaaacaaaaatttgcataaaatagaagaaaagggtttaataaacccctaatgcatatt 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  552779 atatcgtagaacaaacaaaaatttgcataaaatagaagaaaagggtttaataaacccctaatgcatatt 552847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 384 - 550
Target Start/End: Complemental strand, 55505400 - 55505234
Alignment:
Q  384 tcactcaaatcaaaaccaggtggagctcctatctttcttaatgatgtccgtgaatgtaccattgaggcaacaacatttgcatgcactttatcacaacccc 483  Q
    |||||||||| |||||||||||| |||  ||||||||| ||||||| || ||||  |||||||||| |||||||| | | ||||||||||||||||||      
T  55505400 tcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaacactagtatgcactttatcacaaccgt 55505301  T
Q  484 ccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacatc 550  Q
     ||| | ||||||||| ||||||||||||||||||| ||| || |||||||| || |||||||||||    
T  55505300 tcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatc 55505234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 388 - 535
Target Start/End: Original strand, 640723 - 640870
Alignment:
Q  388 tcaaatcaaaaccaggtggagctcctatctttcttaatgatgtccgtgaatgtaccattgaggcaacaacatttgcatgcactttatcacaaccccccaa 487  Q
    ||||||||||||||||||||| | |||||||||| ||||||| || ||||  |||||||||| |||| ||||| |||| |||||||| |||||||   ||    
T  640723 tcaaatcaaaaccaggtggagttactatctttctcaatgatggccttgaaaataccattgagtcaacgacattagcattcactttattacaaccctttaa 640822  T
Q  488 atcgatctctctaagttgtgtgcagttttctaccacatgattcactcc 535  Q
    || || |||||| | || | ||||||||||||||||||||||||||||    
T  640823 attgacctctcttaattctttgcagttttctaccacatgattcactcc 640870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 552566 - 552623
Alignment:
Q  12 atgaaagagacaatcaagaattaaatttgcagaataatattaacaccaaaccatagaa 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  552566 atgaaagagacaatcaagaattaaatttgcagaataatattaacaccaaaccatagaa 552623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 278 - 549
Target Start/End: Original strand, 546611 - 546882
Alignment:
Q  278 atctgaaaacaataaagaacttacatttcggagtttatactccaacaaagcagtttcaaactactacgaaacatagcatccatggtgcaagaagagtttc 377  Q
    |||||||||||||||| |||||||||||  ||| ||| ||| || ||||||||||| | ||  |||  || ||||   |||  | |||| ||||| | ||    
T  546611 atctgaaaacaataaacaacttacattttagagattaaacttcagcaaagcagtttaagacagctagcaagcataatctcctcgatgcaggaagattctc 546710  T
Q  378 tctgtatcactcaaatcaaaaccaggtggagctcctatctttcttaatgatgtccgtgaatgtaccattgaggcaacaacatttgcatgcactttatcac 477  Q
    ||||| |  |||||||| ||||||| |||||||  ||||||||| ||||||| || | ||  || |||||| |||||  ||||  ||| |||||||| ||    
T  546711 tctgttttgctcaaatccaaaccagatggagctattatctttctcaatgatggccttaaaaataacattgaagcaacggcattaacattcactttattac 546810  T
Q  478 aaccccccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacat 549  Q
    || |||  |||| ||||||||| |||| |||||||||||||| |||||| |||||||| || ||||||||||    
T  546811 aagcccttaaattgatctctcttagttttgtgcagttttctagcacatgtttcactcccttctctgtgacat 546882  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 450 - 535
Target Start/End: Original strand, 1545643 - 1545728
Alignment:
Q  450 gcaacaacatttgcatgcactttatcacaaccccccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcc 535  Q
    |||| |||||| |||||||||||||||||||||| ||||| |||| |||| |||||||||||||||| |||| |||  ||||||||    
T  1545643 gcaataacattagcatgcactttatcacaacccctcaaattgatcactcttagttgtgtgcagttttttaccgcatctttcactcc 1545728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 455 - 547
Target Start/End: Complemental strand, 55908952 - 55908860
Alignment:
Q  455 aacatttgcatgcactttatcacaaccccccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgac 547  Q
    |||||| |||| ||| ||||||||||||||||||||||  ||||| ||||||||||||||||| || ||||| ||||| || || ||||||||    
T  55908952 aacattggcattcacattatcacaaccccccaaatcgacttctctgagttgtgtgcagttttcgactacatgtttcacaccattctctgtgac 55908860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 443 - 549
Target Start/End: Complemental strand, 1524719 - 1524613
Alignment:
Q  443 cattgaggcaacaacatttgcatgcactttatcacaaccccccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatct 542  Q
    ||||||||||||||   | ||||| ||||||  |||||||| |||||  |||||||| ||||||||||||||||||| ||||| |||||||||  | |||    
T  1524719 cattgaggcaacaaagctagcatgaactttacaacaacccctcaaattaatctctctcagttgtgtgcagttttctatcacataattcactcccctctct 1524620  T
Q  543 gtgacat 549  Q
    |||||||    
T  1524619 gtgacat 1524613  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 546489 - 546550
Alignment:
Q  122 ttcagtaaatgatgttggggatttcaaatcacatgcaggtctacactatctcttattctctt 183  Q
    ||||| ||||||| || ||||||||||||||||||| |||||||||||| ||||||||||||    
T  546489 ttcagcaaatgatattcgggatttcaaatcacatgctggtctacactatatcttattctctt 546550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 485 - 548
Target Start/End: Original strand, 644736 - 644799
Alignment:
Q  485 caaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgaca 548  Q
    ||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| || ||||||    
T  644736 caaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgaca 644799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 485 - 548
Target Start/End: Complemental strand, 12121651 - 12121588
Alignment:
Q  485 caaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgaca 548  Q
    ||||||||||||||| ||||||||||| |||||||||||||| ||||||||  | |||||||||    
T  12121651 caaatcgatctctcttagttgtgtgcatttttctaccacatgcttcactcccatctctgtgaca 12121588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 485 - 544
Target Start/End: Original strand, 558403 - 558462
Alignment:
Q  485 caaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgt 544  Q
    ||||| ||| ||||| | ||||||||||||||||| |||||| |||||||||||||||||    
T  558403 caaattgatttctctcatttgtgtgcagttttctagcacatgcttcactcctttatctgt 558462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 485 - 532
Target Start/End: Original strand, 570256 - 570303
Alignment:
Q  485 caaatcgatctctctaagttgtgtgcagttttctaccacatgattcac 532  Q
    ||||| |||||| || ||||||||||||||||||||||||||||||||    
T  570256 caaattgatctccctcagttgtgtgcagttttctaccacatgattcac 570303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 464 - 549
Target Start/End: Original strand, 566073 - 566158
Alignment:
Q  464 atgcactttatcacaaccccccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacat 549  Q
    ||||||||||| ||||||| |||| | ||| ||||| ||||||||||||||||| ||||  || |||||||| || ||||| ||||    
T  566073 atgcactttataacaaccctccaacttgatttctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgtaacat 566158  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 535
Target Start/End: Original strand, 370803 - 370875
Alignment:
Q  464 atgcactttatcacaaccccccaaatcgatctctctaag-ttgtgtgcagttttctaccacatgattcactcc 535  Q
    ||||||||||| |||||| |  |||| ||||||||| || ||||||||||||||  |||||||| ||||||||    
T  370803 atgcactttattacaaccgcttaaattgatctctctcaggttgtgtgcagtttttcaccacatgcttcactcc 370875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 480
Target Start/End: Original strand, 1600335 - 1600431
Alignment:
Q  384 tcactcaaatcaaaaccaggtggagctcctatctttcttaatgatgtccgtgaatgtaccattgaggcaacaacatttgcatgcactttatcacaac 480  Q
    |||||||||  |||| ||||||||||| |||||||||| || |||| || | || ||||||| ||| ||||||| || |||| ||||| || |||||    
T  1600335 tcactcaaaggaaaatcaggtggagctgctatctttctcaaggatggccttaaaagtaccatcgagacaacaaccttagcattcacttcatgacaac 1600431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 546
Target Start/End: Complemental strand, 8184243 - 8184163
Alignment:
Q  466 gcactttatcacaaccccccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtga 546  Q
    |||||||||||||   || ||||| |||| || | ||||||||||| ||||||| |||||| |||||||| | ||||||||    
T  8184243 gcactttatcacagttcctcaaattgatcactttcagttgtgtgcaattttctagcacatgcttcactccctcatctgtga 8184163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 53761947 - 53761899
Alignment:
Q  501 agttgtgtgcagttttctaccacatgattcactcctttatctgtgacat 549  Q
    |||||||||||||||||| ||||||| |||||||| || || |||||||    
T  53761947 agttgtgtgcagttttcttccacatgtttcactcccttgtccgtgacat 53761899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 391 - 549
Target Start/End: Complemental strand, 51114069 - 51113911
Alignment:
Q  391 aatcaaaaccaggtggagctcctatctttcttaatgatgtccgtgaatgtaccattgaggcaacaacatttgcatgcactttatcacaaccccccaaatc 490  Q
    ||||||||||||||||||||  ||| | ||| ||||||| || ||||  || |||||||||||||| ||| ||||||||||||  |||||||   ||||     
T  51114069 aatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaatt 51113970  T
Q  491 gatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacat 549  Q
     |||||||| |||| |||||| |||||||||||||| |||||||| || ||||||||||    
T  51113969 aatctctcttagttttgtgcatttttctaccacatgcttcactcccttctctgtgacat 51113911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 412 - 535
Target Start/End: Complemental strand, 514995 - 514872
Alignment:
Q  412 ctatctttcttaatgatgtccgtgaatgtaccattgaggcaacaacatttgcatgcactttatcacaaccccccaaatcgatctctctaagttgtgtgca 511  Q
    |||||||||| ||||||| || ||||  |||||||| ||||||||||||   ||||||||||| |||||| |  |||| ||||||||| ||| |||||||    
T  514995 ctatctttctcaatgatggccttgaaaataccattggggcaacaacattataatgcactttattacaacctcttaaattgatctctctcagtcgtgtgca 514896  T
Q  512 gttttctaccacatgattcactcc 535  Q
    |||||  |||||||| ||||||||    
T  514895 gtttttcaccacatgcttcactcc 514872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 444 - 549
Target Start/End: Complemental strand, 51121128 - 51121023
Alignment:
Q  444 attgaggcaacaacatttgcatgcactttatcacaaccccccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctg 543  Q
    ||||||||||||| ||  ||||| |||||||  |||  || ||| | |||| |||| | |||||||||||||||||||||||| ||||||||||| | ||    
T  51121128 attgaggcaacaaaatcagcatggactttatagcaatacctcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtg 51121029  T
Q  544 tgacat 549  Q
    ||||||    
T  51121028 tgacat 51121023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 51114477 - 51114421
Alignment:
Q  14 gaaagagacaatcaagaattaaatttgca---gaataatattaacaccaaaccatag 67  Q
    |||||||| |||||||||||||||||| |   |||||||||||||||||||||||||    
T  51114477 gaaagagataatcaagaattaaatttgtactagaataatattaacaccaaaccatag 51114421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 543
Target Start/End: Original strand, 1657156 - 1657214
Alignment:
Q  485 caaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctg 543  Q
    |||||||| |||||| ||||||||||| ||||| ||||||||  |||||||||| ||||    
T  1657156 caaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcctttgtctg 1657214  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 455 - 547
Target Start/End: Complemental strand, 1037888 - 1037796
Alignment:
Q  455 aacatttgcatgcactttatcacaaccccccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgac 547  Q
    |||||| |||| ||| ||||||||||||||||||||||  ||||| ||||||||||||||||| || ||||| ||||| || || ||||||||    
T  1037888 aacattggcattcacattatcacaaccccccaaatcgacttctctgagttgtgtgcagttttcgactacatgtttcacaccattctctgtgac 1037796  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 485 - 549
Target Start/End: Complemental strand, 45245279 - 45245215
Alignment:
Q  485 caaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacat 549  Q
    ||||| ||||||| ||||||||||||| |||||||||||||| |||||||| |||||||||||||    
T  45245279 caaattgatctctgtaagttgtgtgcaattttctaccacatgtttcactcccttatctgtgacat 45245215  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 464 - 541
Target Start/End: Complemental strand, 44575710 - 44575633
Alignment:
Q  464 atgcactttatcacaaccccccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatc 541  Q
    |||||| |||||||||   | ||||| || ||||||  ||||||||||||||||||||||||||||||  ||||||||    
T  44575710 atgcacattatcacaatttctcaaattgagctctctcggttgtgtgcagttttctaccacatgattcaagcctttatc 44575633  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 464 - 538
Target Start/End: Original strand, 28934933 - 28935007
Alignment:
Q  464 atgcactttatcacaaccccccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcactccttt 538  Q
    |||||||||| ||||| |  |||||| ||||||||| ||||||||||| |||||||||||||| |||||||||||    
T  28934933 atgcactttaacacaatcatccaaatagatctctcttagttgtgtgcaattttctaccacatgcttcactccttt 28935007  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 492 - 549
Target Start/End: Complemental strand, 6603389 - 6603332
Alignment:
Q  492 atctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacat 549  Q
    |||| ||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||    
T  6603389 atctttctcagttgtttgcagttttctaccacatgtttcactcctttctctgtgacat 6603332  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 492 - 535
Target Start/End: Complemental strand, 10579924 - 10579881
Alignment:
Q  492 atctctctaagttgtgtgcagttttctaccacatgattcactcc 535  Q
    ||||||||||||||||||||||||||||||||||| || |||||    
T  10579924 atctctctaagttgtgtgcagttttctaccacatgtttaactcc 10579881  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 6394765 - 6394833
Alignment:
Q  481 cccccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacat 549  Q
    |||||||||  |||||||| | |||||||||||||||||||||||| | ||| || || ||||||||||    
T  6394765 cccccaaattaatctctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacat 6394833  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 556
Target Start/End: Original strand, 14820605 - 14820669
Alignment:
Q  492 atctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacatcactaca 556  Q
    |||||||| || ||||||||||||| ||||||||| ||||| || || |||||||||||| ||||    
T  14820605 atctctctcagctgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattaca 14820669  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 528
Target Start/End: Original strand, 12102219 - 12102254
Alignment:
Q  493 tctctctaagttgtgtgcagttttctaccacatgat 528  Q
    ||||||| ||||||||||||||||||||||||||||    
T  12102219 tctctctcagttgtgtgcagttttctaccacatgat 12102254  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 535
Target Start/End: Original strand, 6415880 - 6415921
Alignment:
Q  494 ctctctaagttgtgtgcagttttctaccacatgattcactcc 535  Q
    |||||| |||||||||||||| ||||||||||| ||||||||    
T  6415880 ctctcttagttgtgtgcagttctctaccacatgtttcactcc 6415921  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 531
Target Start/End: Complemental strand, 6597076 - 6597040
Alignment:
Q  495 tctctaagttgtgtgcagttttctaccacatgattca 531  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  6597076 tctctaagttttgtgcagttttctaccacatgtttca 6597040  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 549
Target Start/End: Original strand, 9411164 - 9411324
Alignment:
Q  389 caaatcaaaaccaggtggagctcctatctttcttaatgatgtccgtgaatgtaccattgaggcaacaacatttgcatgcactttatcacaaccccccaaa 488  Q
    |||||||||||||||||||| |  |||||| || ||||| | || ||||  ||||||   | |||||| ||| |||||||||  || ||||| || ||||    
T  9411164 caaatcaaaaccaggtggagtttttatcttgctcaatgacggccttgaaaataccatatcgtcaacaatattagcatgcactcgatgacaacgccgcaaa 9411263  T
Q  489 tcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacat 549  Q
    | ||||||| | |||||   ||| ||| ||||||||||  ||||||| |||||| ||||||    
T  9411264 ttgatctctttgagttgcaggcaatttcctaccacatgcatcactcccttatctctgacat 9411324  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 578
Target Start/End: Original strand, 32151044 - 32151299
Alignment:
Q  326 agcagtttcaaactactacgaaacatagcatccatggtgcaagaagagtttc---tctgtatcactcaaatcaaaaccaggtggagctcctatctttctt 422  Q
    |||| ||||||||||||| ||||||  |||||||||  ||||||||||||||   | | | ||||| |||||| ||| |||||||||   |||||||||     
T  32151044 agcactttcaaactactaggaaacaaggcatccatgacgcaagaagagtttcctttttttgtcactgaaatcataacgaggtggagcagttatctttctc 32151143  T
Q  423 aatgatgtccgtgaatgtaccattgaggcaacaacatttgcatgcactttatcacaaccccccaaatcgatctctctaagttgtgtgcagttttctacca 522  Q
    ||||||| || ||||  |||||||    |||||| ||  |||||||||| |||||||||||  |||| |||||| || |||||| | |||||||    ||    
T  32151144 aatgatggccttgaaaataccattttatcaacaatatcagcatgcacttgatcacaaccccttaaattgatctccctcagttgtatacagtttttcctca 32151243  T
Q  523 catgattcactcctttatctgtgacatcactacaataaaacaacaacagttgcaaa 578  Q
    |||| ||||| || || ||||||||||   ||||| | | ||| ||||||||||||    
T  32151244 catgcttcacccccttctctgtgacatatttacaagacaccaataacagttgcaaa 32151299  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 485 - 532
Target Start/End: Original strand, 21235463 - 21235510
Alignment:
Q  485 caaatcgatctctctaagttgtgtgcagttttctaccacatgattcac 532  Q
    ||||| |||||| || ||||||||||||||||||||||||||||||||    
T  21235463 caaattgatctccctcagttgtgtgcagttttctaccacatgattcac 21235510  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 558
Target Start/End: Original strand, 27922380 - 27922486
Alignment:
Q  452 aacaacatttgcatgcactttatcacaaccccccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacatca 551  Q
    ||||| ||| ||||| ||||||| ||||||  |||||   |||| ||| ||||| |||||||||||||||||||| |||||||| || | ||||| ||||    
T  27922380 aacaatattagcatgtactttatgacaaccatccaaactaatctttctcagttgagtgcagttttctaccacatggttcactcccttctttgtgaaatca 27922479  T
Q  552 ctacaat 558  Q
     ||||||    
T  27922480 ttacaat 27922486  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 552
Target Start/End: Complemental strand, 18315451 - 18315400
Alignment:
Q  501 agttgtgtgcagttttctaccacatgattcactcctttatctgtgacatcac 552  Q
    |||||||||||||||||||||||||  ||  ||||||| |||||||||||||    
T  18315451 agttgtgtgcagttttctaccacatacttttctcctttctctgtgacatcac 18315400  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 523
Target Start/End: Complemental strand, 5767920 - 5767811
Alignment:
Q  414 atctttcttaatgatgtccgtgaatgtaccattgaggcaacaacatttgcatgcactttatcacaaccccccaaatcgatctctctaagttgtgtgcagt 513  Q
    |||||||| ||||||| || ||||  |||||| ||||||||||| || || ||||| |||  ||| ||  ||||||  |||||||| |||||||||||||    
T  5767920 atctttctcaatgatggccttgaaactaccatggaggcaacaactttagcttgcacattaggacagccatccaaatttatctctctgagttgtgtgcagt 5767821  T
Q  514 tttctaccac 523  Q
    | | ||||||    
T  5767820 tgtttaccac 5767811  T

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Target: scaffold0295 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 462 - 532
Target Start/End: Complemental strand, 841 - 771
Alignment:
Q  462 gcatgcactttatcacaaccccccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcac 532  Q
    |||| ||| |||||||||||||| |||||||| | || ||||||||||||||||||||| ||||| |||||    
T  841 gcattcacattatcacaacccccaaaatcgatttatcgaagttgtgtgcagttttctactacatgtttcac 771  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 464 - 548
Target Start/End: Original strand, 9580953 - 9581037
Alignment:
Q  464 atgcactttatcacaaccccccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgaca 548  Q
    ||||||||||| |||||||| |||||| ||||||   ||||||||||| |||||||||||| | |||||||| || | |||||||    
T  9580953 atgcactttataacaacccctcaaatcaatctcttccagttgtgtgcaattttctaccacacgcttcactccattgtttgtgaca 9581037  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 524
Target Start/End: Original strand, 9586509 - 9586583
Alignment:
Q  450 gcaacaacatttgcatgcactttatcacaaccccccaaatcgatctctctaagttgtgtgcagttttctaccaca 524  Q
    ||||||||||| |||| || |||||||||||| | ||||||||| ||| | || |||||||| ||||||||||||    
T  9586509 gcaacaacattagcattcaatttatcacaacctctcaaatcgatttcttttagatgtgtgcaattttctaccaca 9586583  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 549
Target Start/End: Original strand, 7554415 - 7554457
Alignment:
Q  507 gtgcagttttctaccacatgattcactcctttatctgtgacat 549  Q
    |||||||||||||||||||| |||||||| || ||||||||||    
T  7554415 gtgcagttttctaccacatgcttcactcccttttctgtgacat 7554457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 495 - 557
Target Start/End: Complemental strand, 19468683 - 19468621
Alignment:
Q  495 tctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacatcactacaa 557  Q
    ||||| ||||||| ||| ||||||  |||||| ||||||||||| |||||||||||| |||||    
T  19468683 tctctcagttgtgagcaattttctttcacatgtttcactcctttctctgtgacatcattacaa 19468621  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 558
Target Start/End: Original strand, 17205527 - 17205577
Alignment:
Q  508 tgcagttttctaccacatgattcactcctttatctgtgacatcactacaat 558  Q
    ||||||||||||||||||| |||| |||||| |||||||||||| ||||||    
T  17205527 tgcagttttctaccacatgtttcaatcctttttctgtgacatcattacaat 17205577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 558
Target Start/End: Original strand, 32267387 - 32267453
Alignment:
Q  492 atctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacatcactacaat 558  Q
    |||| ||||||||| |||||||||||||| ||||| |||||||| || | ||||| |||| ||||||    
T  32267387 atctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaat 32267453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 538
Target Start/End: Complemental strand, 20478267 - 20478223
Alignment:
Q  494 ctctctaagttgtgtgcagttttctaccacatgattcactccttt 538  Q
    |||||| |||||||||||||||||||| ||||| ||| |||||||    
T  20478267 ctctctcagttgtgtgcagttttctacgacatgtttcgctccttt 20478223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 558
Target Start/End: Complemental strand, 41901704 - 41901656
Alignment:
Q  510 cagttttctaccacatgattcactcctttatctgtgacatcactacaat 558  Q
    ||||||||||||||||| |||||||| || | |||||||||| ||||||    
T  41901704 cagttttctaccacatgcttcactcccttctttgtgacatcattacaat 41901656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 501 - 558
Target Start/End: Complemental strand, 10170259 - 10170202
Alignment:
Q  501 agttgtgtgcagttttctaccacatgattcactcctttatctgtgacatcactacaat 558  Q
    ||||||| ||||||||||  |||||| ||||||||||| |||||||||||| ||||||    
T  10170259 agttgtgagcagttttctttcacatgtttcactcctttctctgtgacatcattacaat 10170202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 501 - 558
Target Start/End: Complemental strand, 10177784 - 10177727
Alignment:
Q  501 agttgtgtgcagttttctaccacatgattcactcctttatctgtgacatcactacaat 558  Q
    ||||||| ||||||||||  |||||| ||||||||||| |||||||||||| ||||||    
T  10177784 agttgtgagcagttttctttcacatgtttcactcctttctctgtgacatcattacaat 10177727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 549
Target Start/End: Original strand, 10614521 - 10614562
Alignment:
Q  508 tgcagttttctaccacatgattcactcctttatctgtgacat 549  Q
    ||||||||||||||||||| ||||||||||  ||||||||||    
T  10614521 tgcagttttctaccacatgtttcactccttcttctgtgacat 10614562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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