View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6180_high_1 (Length: 434)
Name: NF6180_high_1
Description: NF6180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6180_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 34276397 - 34276805
Alignment:
| Q |
18 |
gtccaaacatctgagatatctttatatatagtaaga--tttattttcttcaatactcaagaataaaacgaagatcgaaatctagattctaaagaaaaaga |
115 |
Q |
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| T |
34276397 |
gtccaaacatctgagatatctttatatatagtaagagatttattttcttcagtactcaagaataaaacgaagatcgaaatctagattctaaagaaaaaga |
34276496 |
T |
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| Q |
116 |
taaaggagaaaaataatcatgtgaccccaaatatccaagaagtaaactaaagcatatttaatgattcatgatagtacacaaaagttccaccatggtacag |
215 |
Q |
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| T |
34276497 |
taaaggagaaaaataatcatgtgaccccaaatatccaagaagtaaactaaagcatatttaatgattcatgatagtacacaaaagttccaccatggtacag |
34276596 |
T |
|
| Q |
216 |
acatagctgatgagttacacagggtagtgtgtcttgcagtacatacaaatgcctgaccatcagggattacagttcattatcagatacaccattgacatca |
315 |
Q |
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| T |
34276597 |
acatagctgatgagttacacagggtagtgtgtcttgcagtacatacaaatgcctgaccatcagggattacagttcattatcagatacaccattgacatca |
34276696 |
T |
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| Q |
316 |
ttattatttacactaactaaagaatgcttttgagctttatttatgagttaattaactatattcatgatttaccatgactaggtttaattagcatttacta |
415 |
Q |
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| T |
34276697 |
ttattatttacactaactaaagaatgcttttgagctttatttatgagttaattaactatattcatgaattaccatgactaggtttaattagcatttacta |
34276796 |
T |
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| Q |
416 |
ctacctatg |
424 |
Q |
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| T |
34276797 |
ctacctatg |
34276805 |
T |
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