View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6180_high_2 (Length: 363)
Name: NF6180_high_2
Description: NF6180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6180_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 354
Target Start/End: Original strand, 3700456 - 3700794
Alignment:
| Q |
16 |
cacttaatctgtccaccaccctttgaacctgaccaagccacggaccgttaattacgcaatcaccttccgaaatggaacgaatcttcagaagtttcttgga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3700456 |
cacttaatctgtccaccaccctttgaacctgaccaagccacggaccgttaattacgcaatcaccttccgaaatggaacgaatcttcagaagtttcttgga |
3700555 |
T |
|
| Q |
116 |
gttcacattttttaatacatttccttgaatgttttccaaatccactaacacgtcaacacttacgaccctccccatctgtccagatgggtctgacaaggag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3700556 |
gttcacattttttaatacatttccttgaatgttttccaaatccactaacacgtcaacacttacgaccctccccatctgtccagatgggtctgacaaggag |
3700655 |
T |
|
| Q |
216 |
cacacaacatcgccgtatgcaaatgttctctcgaatgagaggaaatcatttatcctgccgatgctttcctctaaacttgataatatgctctgagcttggc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3700656 |
cacacaacatcgccgtatgcaaatgttctctcgaatgagaggaaatcatttatcctaccgatgctttcctctaaacttgataatatgctctgagcttggc |
3700755 |
T |
|
| Q |
316 |
caccatagagaaaatcaatatcctcttgatcgtctctgc |
354 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
3700756 |
caccatagagaaaatcaatatcctcttgatcgtcactgc |
3700794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 6603089 - 6602760
Alignment:
| Q |
16 |
cacttaatctgtccaccaccctttgaacctgaccaagccacggaccgttaattacgcaatcaccttccgaaatggaacgaatcttcagaagtttcttgga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
6603089 |
cacttaatctgtccaccaccctttgaacctgaccaagccatggccctttaattacgcaatcaccttccgaggtggaatgaatcttcagaagtttcttgga |
6602990 |
T |
|
| Q |
116 |
gttcacattttttaatacatttccttgaatgttttccaaatccactaacacgtcaacacttacgaccctccccatctgtccagatgggtctgacaaggag |
215 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| ||||| |||| |
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| T |
6602989 |
gttcacattttttaatacatttccttgaatgttttccaaatccacaaacatgtcaacacttacgaccctccccatctgtccagacgggtgtgacagggag |
6602890 |
T |
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| Q |
216 |
cacacaacatcgccgtatgcaaatgttctctcgaatgagaggaaatcatttatcctgccgatgctttcctctaaacttgataatatgctctgagcttggc |
315 |
Q |
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||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6602889 |
cacacgacatcgccgtaagcaaatgttctctcgaatgaaaggaaatcatttatcctaccgatgc-ttcctctaaacttgataatatgctctgagcttggc |
6602791 |
T |
|
| Q |
316 |
caccatagagaaaatcaatatcctcttgatc |
346 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
6602790 |
caccatagagaaaatcaatatcctcttgatc |
6602760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 346
Target Start/End: Complemental strand, 35440273 - 35439952
Alignment:
| Q |
25 |
tgtccaccaccctttgaacctgaccaagccacggaccgttaattacgcaatcaccttccgaaatggaacgaatcttcagaagtttcttggagttcacatt |
124 |
Q |
| |
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||||||| ||||||||| || |||| ||||| || || ||| |||| |||| ||||| |||||||| ||||||||| |||||| | ||||| ||||| |
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| T |
35440273 |
tgtccacaaccctttgagcccgaccgagccatggccccttagttacataatcgccttctgaaatggaccgaatcttcgaaagtttgtccgagtttacatt |
35440174 |
T |
|
| Q |
125 |
ttttaatacatttccttgaatgttttccaaatccactaacacgtcaacacttacgaccctccccatctgtccagatgggtctgacaaggagcacacaaca |
224 |
Q |
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||||| || ||||||| || ||||| ||||| |||| ||||||||| ||||| ||||||||||||| ||| ||||||| |||||| || ||| |
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| T |
35440173 |
ttttagtaactttcctttctcattctccaagtccacaaacaaatcaacacttgtcacccttcccatctgtccagttggatctgacacggagcagaccaca |
35440074 |
T |
|
| Q |
225 |
tcgccgtatgcaaatgttctctcgaatgagaggaaatcatttatcctgccgatgctttcctctaaacttgataatatgctctgagcttggccaccataga |
324 |
Q |
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|| || | |||| |||||||| |||||||| ||||||| ||| | || ||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
35440073 |
tcaccatgaacaaaagttctctcaaatgagagaaaatcatcaatcttcccaatgctttcctctaaacttgataatatgttctgagcttgaccaccatatt |
35439974 |
T |
|
| Q |
325 |
gaaaatcaatatcctcttgatc |
346 |
Q |
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|||||||||| || |||||||| |
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| T |
35439973 |
gaaaatcaatttcttcttgatc |
35439952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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