View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6180_high_4 (Length: 252)
Name: NF6180_high_4
Description: NF6180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6180_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 3700896 - 3701139
Alignment:
| Q |
1 |
aaaataacttcaagacacaataaaagtaggaaataatagtattgttaggaagtgaaatctcaacaaatccttaaaggaatattccaaataaataaggatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3700896 |
aaaataacttcaagacacaataaaagtaggaaataatagtattgttaggaagtgaaatctcaacaaatccttaaaggaatattccaaataaataaggatt |
3700995 |
T |
|
| Q |
101 |
caagaagatccttacctttccaagctagtagaaacattaaacaccagagtccgtatgtattgcaatcaacaacggatgagtcgatactgacttcagagga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3700996 |
caagaagatccttacctttccaagctagtagaaacattaaacaccagagtccgtatgtattgcaatcaacaacggatgagtcgataccaacttcagagga |
3701095 |
T |
|
| Q |
201 |
tattctgtatataatacaaaatgtgtctgattgatacctatgct |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3701096 |
tattctgtatataatacaaaatgtgtctgattgatacctatgct |
3701139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 6602648 - 6602406
Alignment:
| Q |
1 |
aaaataacttcaagacacaataaaagtaggaaataatagtattgttaggaagtgaaatctcaacaaatccttaaaggaatattccaaataaataaggatt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
6602648 |
aaaataacttcaagacacaataaaagtaggaaattatagtattgttcggaagcaaaatctcaacaaatccgtaaaggaatattaacgataaataaggatt |
6602549 |
T |
|
| Q |
101 |
caagaagatccttacctttccaagctagtagaaacattaaacaccagagtccgtatgtattgcaatcaacaacggatgagtcgatactgacttcagagga |
200 |
Q |
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||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6602548 |
caagaagatatttacctttccaagctaatagaaacattaaacaccagagtccgtatgtattgcaatcaacaacggatgagtcgatactgacttcagagga |
6602449 |
T |
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| Q |
201 |
tattctgtatataatacaaaatgtgtctgattgatacctatgct |
244 |
Q |
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|||| |||||| |||||||||||||||| ||||||||||||||| |
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| T |
6602448 |
tatt-tgtatacaatacaaaatgtgtctaattgatacctatgct |
6602406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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