View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6180_low_3 (Length: 293)
Name: NF6180_low_3
Description: NF6180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6180_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 51067539 - 51067691
Alignment:
| Q |
18 |
aagagtacctgtgaagtcccaaggatgttgtgaggccagcaattccagctcctacgatcacaatatcttttacaatcacagtttccattactatatattc |
117 |
Q |
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| T |
51067539 |
aagagtacctgtgaagtcccaaggatgttgtgaggccagcaattccagctcctacgatcacaatatcttttacaatcacagtttccattac----tattc |
51067634 |
T |
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| Q |
118 |
ttgtaagtttttattataatagaaatagaatggacagaagcttgctataggtaagga |
174 |
Q |
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| T |
51067635 |
ttgaaagtttttattataatagaaatagaatggacagaagcttgctataggtaagga |
51067691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 51036900 - 51036985
Alignment:
| Q |
23 |
tacctgtgaagtcccaaggatgttgtgaggccagcaattccagctcctacgatcacaatatcttttacaatcacagtttccattac |
108 |
Q |
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| T |
51036900 |
tacctgtaaagtcctaaggatgttgtgagtccagcaattccagctcccacaatcacaatatcttcttcaattacagtttccattac |
51036985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 40611817 - 40611754
Alignment:
| Q |
23 |
tacctgtgaagtcccaaggatgttgtgaggccagcaattccagctcctacgatcacaatatctt |
86 |
Q |
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| T |
40611817 |
tacctgtgaagtgccaaggatgttgtgaggccagcaattccagctcccacaatcacaatatctt |
40611754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 51033492 - 51033555
Alignment:
| Q |
23 |
tacctgtgaagtcccaaggatgttgtgaggccagcaattccagctcctacgatcacaatatctt |
86 |
Q |
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| T |
51033492 |
tacctgtgaagtgccaaagatgttgtgagaccagcaattccagctcccacaatcacaatatctt |
51033555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 51067711 - 51067755
Alignment:
| Q |
225 |
tattataattgggcaaaaggtcaaggtgatgcaacaccactcatat |
270 |
Q |
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| T |
51067711 |
tattataattgggcaaa-ggtcaaggtgatgcaacaccactgatat |
51067755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 51070174 - 51070238
Alignment:
| Q |
22 |
gtacctgtgaagtcccaaggatgttgtgaggccagcaattccagctcctacgatcacaatatctt |
86 |
Q |
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| T |
51070174 |
gtacctgtgaagtcctaaggcagtagcaaggccagcaattccagctcccacaatcacaacatctt |
51070238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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