View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6180_low_5 (Length: 242)
Name: NF6180_low_5
Description: NF6180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6180_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 85 - 225
Target Start/End: Complemental strand, 40359410 - 40359270
Alignment:
| Q |
85 |
aaacaagcaccattcttctcaaatctacgaatagatttcttattattccgaataaccctagacatcagtgccaacgtcttatgcaaaattgtaatatcaa |
184 |
Q |
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| T |
40359410 |
aaacaagcaccattcttttcaaatctacgaatagatttcttattattccgaataaccctagacatcggtgccaacgtcttatgcagaattgtaatatcaa |
40359311 |
T |
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| Q |
185 |
aaggacaaacaaactccaacaactcctaccaatgaagttct |
225 |
Q |
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| T |
40359310 |
aaggacaaacaaactccaacaactcctgccaatgaagttct |
40359270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 40363569 - 40363521
Alignment:
| Q |
96 |
attcttctcaaatctacgaatagatttcttattattccgaataacccta |
144 |
Q |
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| T |
40363569 |
attcttctcaaatctacaaatagatttcttattattctgaataacccta |
40363521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 11346536 - 11346468
Alignment:
| Q |
160 |
gtcttatgcaaaattgtaatatcaaaaggacaaacaaactccaacaactcctaccaatgaagttcttct |
228 |
Q |
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| T |
11346536 |
gtcttatgcgaaattgtaaaatccaaaggacaaacaatttccaacaactcctgccaataatgttcttct |
11346468 |
T |
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