View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6181_low_1 (Length: 493)
Name: NF6181_low_1
Description: NF6181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6181_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 478
Target Start/End: Complemental strand, 28470177 - 28469718
Alignment:
| Q |
19 |
caaccctccctctacccattttttcttatcactctctcttctgctatgagtctagnnnnnnnn-cagtaactgatcagaaagtttgtatttatattcgaa |
117 |
Q |
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| T |
28470177 |
caaccctccctctacccattttttcttatcactctctcttctgctatgagtctagaaaaaaaaacagtaactgatcagaaagtttgtatttatattcgaa |
28470078 |
T |
|
| Q |
118 |
atnnnnnnnnnnnnatattgtttaagtagttactctttagtctctaccccccgtatattagatactgtggttttaaattgcggtctacaactataattgc |
217 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
28470077 |
attgtgtgtgtgtgatattgtttaagtagttactctttagtctctaccccccctatattagatagtgtggttttaaattgcggtctacaactctaattgc |
28469978 |
T |
|
| Q |
218 |
gacaaacttcaaaggaatttgtcgtctccgtacctgttttgttaccacaatttcaatcgcaatggtcacatttctcggcattttgttgaaatatagcgta |
317 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28469977 |
gacaaacttcaaaggaatttgtcgtccccgtacctgttttgttaccacaatttcaatcgcaatggtcacatttctcggcattttgttgaaatatagcgta |
28469878 |
T |
|
| Q |
318 |
agtgcagccgtaatttaaaaccatccttgatagtaaaatatattttagaaacgtcaatggtcgcaatctagctcgtgacatcgatgtttgtttattttat |
417 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28469877 |
agttcagccgtaatttaaaaccatccttgatagtaaaatatattttagaaacgtcaatggtcgcaatctagctcgtgacatcgatgttagtttattttat |
28469778 |
T |
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| Q |
418 |
atctttgtaaacggcaattaagactaaatcaatcgtattatgtctctagttgtgtggtgat |
478 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28469777 |
atctttg-caacggcaattaagactaaatcaatcgtattatgtctctagttgtgtggtgat |
28469718 |
T |
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