View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6182_high_1 (Length: 718)
Name: NF6182_high_1
Description: NF6182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6182_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 1 - 693
Target Start/End: Complemental strand, 48436371 - 48435680
Alignment:
| Q |
1 |
catagaaatcaattatcacatgacatgaaatgtttcattgtttgtttcagagagtatttggtgtgaatccaatagcagactctactgatcacctaaactc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48436371 |
catagaaatcaattatcacatgacatgaaatgtttcattgtttgtttcagagagtatttggtgtgaagccaatagcagactctactgatcacctaaactc |
48436272 |
T |
|
| Q |
101 |
agctctataccttcaagtgagcattattagtcaagcactcatctttgtgacaaggtcaaggagttggtcttatgtcgaacgtcctggcttgttgcttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48436271 |
agctctataccttcaagtgagcattattagtcaagcactcatctttgtgacaaggtcaaggagttggtcttatgtcgaacgtcctggcttgttgcttctt |
48436172 |
T |
|
| Q |
201 |
gtagccttctttgctgcacagttggttagccgtccnnnnnnnnctacctacaacttgaaatttagtaaatcagcattctaatctttgaaa-ttgtaagca |
299 |
Q |
| |
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| T |
48436171 |
gtagccttctttgctgcacagttggttagtcct--ttttttttctacctacaacttgaaatttagtaaatcagcattctaatctttgaaaattgtaagca |
48436074 |
T |
|
| Q |
300 |
tgcgtcgttttagtccctcgaattacgaaacaacactttagtctcttaaattaaagtattaaacaattccaattaatttagtcaaacaattttaaagttt |
399 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48436073 |
tccgtcgttttagtccctcgaattacgaaacaacactttagtctcttaaattaaagtattaaacaattccaattaatttagtcaaacaattttaaagttt |
48435974 |
T |
|
| Q |
400 |
ttattgtttgtgaaattaaacttttgtatatttgtgaattattgaacttaggtggcaactgtcattgctgtgtatgcacactggggatttgctagaatca |
499 |
Q |
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| T |
48435973 |
ttattgtttgtgaaattaaacttttgtatatttgtgaattattgaacttaggtggcaactgtcattgctgtgtatgcacactggggatttgctagaatca |
48435874 |
T |
|
| Q |
500 |
atggaattggttggagatgggctggagtaatctggatcttcaccattgtcacttatattcctcttgacatcctcaaattcatcatccgtttgggattgtc |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48435873 |
atggaattggttggagatgggctggagtaatctggatcttcaccgttgtcacttatattcctcttgacatcctcaaattcatcatccgtttgggattgtc |
48435774 |
T |
|
| Q |
600 |
aggcagggcatggaacaacatgcttgataataaggtctataaacattcttaaaataaccaaattaaattttctttgtttcatagtctatatata |
693 |
Q |
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| T |
48435773 |
aggcagggcatgggacaacatgcttgataataaggtctataaacattcttaaaataatcaaattaaattttctttgtttcatagtctatatata |
48435680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 2e-39; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 448 - 623
Target Start/End: Complemental strand, 21979768 - 21979593
Alignment:
| Q |
448 |
taggtggcaactgtcattgctgtgtatgcacactggggatttgctagaatcaatggaattggttggagatgggctggagtaatctggatcttcaccattg |
547 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||| || |||| |
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| T |
21979768 |
taggtggcaactgccattgctgtgtatgcacactgggactttgctagaatcaatggaattgggtggagatgggctggagttatctggatctacagcatta |
21979669 |
T |
|
| Q |
548 |
tcacttatattcctcttgacatcctcaaattcatcatccgtttgggattgtcaggcagggcatggaacaacatgct |
623 |
Q |
| |
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| || || |||||||||||||| ||||| || ||||||| ||||| | |||| || |||||| |||||||||| |
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| T |
21979668 |
ttacatacattcctcttgacattctcaagtttctcatccgcatgggactcacaggtagtgcatgggacaacatgct |
21979593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 21980002 - 21979869
Alignment:
| Q |
96 |
aactcagctctataccttcaagtgagcattattagtcaagcactcatctttgtgacaaggtcaaggagttggtcttatgtcgaacgtcctggcttgttgc |
195 |
Q |
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||||||||||| ||||| |||||||| || |||||||| ||||| ||||||||||| |||||||| || ||||| | ||||| || ||||| ||| ||| |
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| T |
21980002 |
aactcagctctctacctccaagtgagtatcattagtcaggcacttatctttgtgaccaggtcaagaagctggtcattcgtcgagcgccctggtttgatgc |
21979903 |
T |
|
| Q |
196 |
ttcttgtagccttctttgctgcacagttggttag |
229 |
Q |
| |
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|||||| ||||||| |||||||||| |||||||| |
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| T |
21979902 |
ttcttggagccttcattgctgcacaattggttag |
21979869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 45196871 - 45196795
Alignment:
| Q |
108 |
taccttcaagtgagcattattagtcaagcactcatctttgtgacaaggtcaaggagttggtcttatgtcgaacgtcc |
184 |
Q |
| |
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|||||||||||||| | | | |||||||| ||||||||||| ||| | |||||||| ||||||| ||||||||||| |
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| T |
45196871 |
taccttcaagtgagtactgtaagtcaagctctcatctttgttacacgctcaaggagctggtctttcgtcgaacgtcc |
45196795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 534
Target Start/End: Original strand, 15870398 - 15870453
Alignment:
| Q |
479 |
actggggatttgctagaatcaatggaattggttggagatgggctggagtaatctgg |
534 |
Q |
| |
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||||||||||||| |||||| | |||||||||||| ||||||| ||||| |||||| |
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| T |
15870398 |
actggggatttgcaagaatccaaggaattggttggggatgggcaggagtcatctgg |
15870453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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