View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6182_high_12 (Length: 312)
Name: NF6182_high_12
Description: NF6182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6182_high_12 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 277866 - 278140
Alignment:
| Q |
18 |
aaatactcttactcttttgttggaattgtgagagaaaaacaccaagaagtgacagagtggtggtgcttatcctttggggacttgaggactttctgcgtga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
277866 |
aaatactcttactcttttgttggaattgtgagagaaaaacaccaagaagtgacagagtggtggtgcttatcctttggggac--------tttctgcatga |
277957 |
T |
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| Q |
118 |
aacaatggcagaatggcagagcttctgatagttgaaacaacgatgtgtgagataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttggg |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
277958 |
aacaatggcagaatggtagagcttctgatagttgaaacaacgatgtgtgagataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttggg |
278057 |
T |
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| Q |
218 |
atatccattnnnnnnnnnnnnnncaattaaatgtgttgattttggtgaaccggtaaccaagtcaaaagttaaaagaatagtat |
300 |
Q |
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| T |
278058 |
atatccattaaaaaaaataaaaacaattaaatgtgttgattttggtgaaccggtaaccaagtcaaaagttaaaagaatagtat |
278140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 26398471 - 26398744
Alignment:
| Q |
18 |
aaatactcttactcttttgttggaattgtgagagaaaaacaccaagaagtgacagagtggtggtgcttatcctttggggacttgaggactttctgcgtga |
117 |
Q |
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| T |
26398471 |
aaatactcttactcttttgttggaattgtgagagaaaaacaccaagaagtgacagagtggtggtgcttatcctttggggac--------tttctgcatga |
26398562 |
T |
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| Q |
118 |
aacaatggcagaatggcagagcttctgatagttgaaacaacgatgtgtgagataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttggg |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26398563 |
aacagtggcagaatggcagagcttctgatagttgaaacaacgatgtgtgagataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttggg |
26398662 |
T |
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| Q |
218 |
atatccattnnnnnnnnnnnnnncaattaaatgtgttgattttggtgaaccggtaaccaagtcaaaagttaaaagaatagtat |
300 |
Q |
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| T |
26398663 |
atatccatt-aaaaaaaaaaaaacaattaaatgtgttgattttggtgaaccggtaaccaagtcaaaagttaaaagaatagtat |
26398744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 30756 - 31029
Alignment:
| Q |
18 |
aaatactcttactcttttgttggaattgtgagagaaaaacaccaagaagtgacagagtggtggtgcttatcctttggggacttgaggactttctgcgtga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
30756 |
aaatactcttactcttttgttggaattgtgagagaaaaacaccaagaagtgacagagtggtggtgcttatcctttggggac--------tttctgcatga |
30847 |
T |
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| Q |
118 |
aacaatggcagaatggcagagcttctgatagttgaaacaacgatgtgtgagataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttggg |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30848 |
aacagtggcagaatggcagagcttctgatagttgaaacaacgatgtgctcgataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttggg |
30947 |
T |
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| Q |
218 |
atatccattnnnnnnnnnnnnnncaattaaatgtgttgattttggtgaaccggtaaccaagtcaaaagttaaaagaatagtat |
300 |
Q |
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| T |
30948 |
atatccatt-aaaaaaataaaaacaattaaacgtgttgattttggtgaaccggtaaccaagtcaaaagttaaaagaatagtat |
31029 |
T |
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