View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6182_high_15 (Length: 282)
Name: NF6182_high_15
Description: NF6182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6182_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 42291605 - 42291343
Alignment:
| Q |
1 |
aacaagagaacgcatgctttgtggatattccccttttgttagtggttccatatacctgtaatcatttttacaaatagnnnnnnnnnnnntaatttcacga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42291605 |
aacaagagaacgcatgctttgtggatattccccttttgttagtggttccatatacctgtaatcatttttacaaatagaaaacttaaaaacaatttcacga |
42291506 |
T |
|
| Q |
101 |
acaattgttattgttgagaattactactatacgatatagtccaactaattatagaaacatggatcggttttggaattggtattatgatgatttcaaatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42291505 |
acaattgttattgttgagaattactactatacgatatagtccaactaattatagaaacatggatcggttttggaattggtattatgatgatttcaaatga |
42291406 |
T |
|
| Q |
201 |
tcgctttttattgtgatcattggagtaactaattaataacattttatggaaacttcttgttttgcacctttgata |
275 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42291405 |
tcgctttttattgtgatca-tggag-----------taacattttatggaaacttcttgttttgcacctttgata |
42291343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 42165807 - 42165883
Alignment:
| Q |
1 |
aacaagagaacgcatgctttgtggatattccccttttgttagtggttccatatacctgtaatcatttttacaaatag |
77 |
Q |
| |
|
|||||| ||||||||||||| |||||||| || |||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
42165807 |
aacaagggaacgcatgctttttggatattttcccgttgttagtggttccatgaacctgtaatcattgttacaaatag |
42165883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 42155652 - 42155725
Alignment:
| Q |
1 |
aacaagagaacgcatgctttgtggatattccccttttgttagtggttccatatacctgtaatcatttttacaaa |
74 |
Q |
| |
|
||||||| || ||||||||||||| |||| || ||||||||||||||||| ||||||||||| | ||||||| |
|
|
| T |
42155652 |
aacaagacaatgcatgctttgtgggtattttcccgttgttagtggttccataaacctgtaatcaatgttacaaa |
42155725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University