View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6182_high_4 (Length: 489)
Name: NF6182_high_4
Description: NF6182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6182_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 24 - 474
Target Start/End: Original strand, 37769001 - 37769456
Alignment:
| Q |
24 |
actcaccggtgtttaattcgaagagtttatccaagtctaatgaaagccaatttgagaatcnnnnnnngttccattgcctaggaatatacatggtgtttct |
123 |
Q |
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| T |
37769001 |
actcaccggtgtttaattcgaagagtttatccaagtctaatgaaagccaatttgagaatcaaaaaaagttccattgcctaggaatatacatggtgtttct |
37769100 |
T |
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| Q |
124 |
cataagcttagtagttacagtctgttggggtaaagttaatgtcattgttttgacatcaatgtttttctgttgtttttgtctttgtaacgcatgttctcgc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | |
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| T |
37769101 |
cataagcttagtagttacagtctgttggggtaaagttaatgtcattgttttgacatcaatgtttttctgttgtttttgtctttgcaacacatgttctcac |
37769200 |
T |
|
| Q |
224 |
cagctaaaaagggttggtaaatctcgcaaagatgtgagttcaactcttgctgctggtgtgaggtcacaccctcgcagctttgagccatgaggcttggcta |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37769201 |
cagctaaaaagggttggtaaatctcgcaaagatgtgagttcaactctcgctgctggtgtgaggtcacaccctcgcagctttgagccatgaggcttggcta |
37769300 |
T |
|
| Q |
324 |
tggtgaaccctgggacccaactcacctaaccttttattcgc-----agctgcaattgcgatcgcaaccaaatcataaagatagttaaaaggggtgctcct |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37769301 |
tggtgaaccctgggacccaactcacctaaccttttattcgcagcgtagctgcaattgcgatcacaaccaaatcataaagatagttaaaaggggtgctcct |
37769400 |
T |
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| Q |
419 |
aagaataaaaatttctttagcacaagtggaagggcacaagtttcgtgtgttgttat |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37769401 |
aagaataaaaatttctttagcacaagtggaagggcacaagtttcgtgtgttgttat |
37769456 |
T |
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