View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6182_high_8 (Length: 400)
Name: NF6182_high_8
Description: NF6182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6182_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 37399897 - 37399530
Alignment:
| Q |
18 |
tgtgtgatggatatcttgaaactgaagttgattggataccaccaatgagaggtgttaaactgaaagaccttcccactttctttaggactacaaattctaa |
117 |
Q |
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| T |
37399897 |
tgtgtgatggatatcttgaaactgaagttgattggataccagcaatgagaggtgttaaactgaaagaccttcccactttctttaggactacaaattctaa |
37399798 |
T |
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| Q |
118 |
tgatacaatgttcaattacaacagagaatcagtaaacaatgcaatgaatgcaaaaggtgtcattcttaacactttccaagaattagagcaagaggtatta |
217 |
Q |
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| T |
37399797 |
tgatacaatgttcaattacaacagagaatcagtgaacaatgcaatgaatgcaaaaggtgtcattcttaacactttccaagaattagagcaagaggtatta |
37399698 |
T |
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| Q |
218 |
gatgcaatcaaaatgaaataccctcacctttaccctattggtccattatccatgctgcatnnnnnnntttcaaattcaagttcaaataatcaattggatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37399697 |
gatgcaatcaaaatgaaataccctcacctttaccctattggtccattatccatgctgcataaaaaaaattcaaattcaagttcaaataatcaattggatt |
37399598 |
T |
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| Q |
318 |
ccattgattttaatttatggaaggaagatgttaactgcatgaattggttggataaaaaagacaaaggt |
385 |
Q |
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| T |
37399597 |
ccattgattttaatttatggaaggaagatgttaactgcatgaattggttggataaaaaagacaaaggt |
37399530 |
T |
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