View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6182_low_10 (Length: 350)

Name: NF6182_low_10
Description: NF6182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6182_low_10
NF6182_low_10
[»] chr5 (13 HSPs)
chr5 (19-341)||(33821520-33821842)
chr5 (136-340)||(33734191-33734395)
chr5 (150-233)||(33762760-33762843)
chr5 (136-224)||(33748779-33748867)
chr5 (136-224)||(33834899-33834987)
chr5 (149-233)||(33904390-33904474)
chr5 (147-232)||(33679811-33679896)
chr5 (147-233)||(33865881-33865967)
chr5 (147-226)||(33698534-33698613)
chr5 (288-338)||(33748665-33748715)
chr5 (288-338)||(33834785-33834835)
chr5 (23-60)||(33734534-33734571)
chr5 (277-338)||(33762658-33762719)
[»] scaffold0023 (1 HSPs)
scaffold0023 (141-245)||(114199-114303)
[»] scaffold0247 (2 HSPs)
scaffold0247 (137-236)||(22142-22241)
scaffold0247 (279-323)||(22284-22328)
[»] scaffold0193 (2 HSPs)
scaffold0193 (137-224)||(25206-25293)
scaffold0193 (23-62)||(24394-24433)
[»] chr8 (2 HSPs)
chr8 (146-224)||(21305875-21305953)
chr8 (272-338)||(21305761-21305827)
[»] chr7 (2 HSPs)
chr7 (149-235)||(5471194-5471280)
chr7 (278-341)||(5471317-5471380)
[»] scaffold0001 (1 HSPs)
scaffold0001 (149-235)||(148773-148859)


Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 33821842 - 33821520
Alignment:
Q  19 atcataaggttacacaatctcctagggaataggtaagcttccaattagggcaatgcatgtagcctagctagaattaagtatgatgtattttttagataac 118  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33821842 atcataaggttacacaatctcctggggaataggtaagcttccaattagggaaatgcatgtagcctagctagaattaagtatgatgtattctttagataac 33821743  T
Q  119 attttagctaatgtatttatacatataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacaca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33821742 attttagctaatgtatttatacatataatatagatggtcattgattgctgcaaggcttcctagtagaacggctaatgatgtgaaaaactattggaacaca 33821643  T
Q  219 catttgcggaagaaggttctttcagaatcagtagnnnnnnnnnnnnnngagagacctgaggaaacaatgaaagctcatgaagttattaaacctcgaccta 318  Q
    ||||||||||||||||||||||||||||||||||              ||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  33821642 catttgcggaagaaggttctttcagaatcagtagaaaaaaatgaaaaagagagacctaaggaaacaatgaaagctcatgaagttattatacctcgaccta 33821543  T
Q  319 taactctttcaactcattcatct 341  Q
    |||||||||||||||||||||||    
T  33821542 taactctttcaactcattcatct 33821520  T

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Target: chr5; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 136 - 340
Target Start/End: Complemental strand, 33734395 - 33734191
Alignment:
Q  136 tatacatataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaaggt 235  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  33734395 tatacatataatatagatggtcattgattgctgcaaggcttcctggtagaactgctaatgatgtgaaaaacttttggcacacacatttgcggaagaaggt 33734296  T
Q  236 tctttcagaatcagtagnnnnnnnnnnnnnngagagacctgaggaaacaatgaaagctcatgaagttattaaacctcgacctataactctttcaactcat 335  Q
    | |||||||| ||  ||              |||| |||| |||||||||||||||||||||||||||||||||| | ||||  || | |||||||||||    
T  33734295 tgtttcagaaacaaaagaaaagaaagaaaaagagaaacctaaggaaacaatgaaagctcatgaagttattaaaccccaacctcgaattttttcaactcat 33734196  T
Q  336 tcatc 340  Q
    |||||    
T  33734195 tcatc 33734191  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 33762843 - 33762760
Alignment:
Q  150 agatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaag 233  Q
    |||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||| ||||| ||||||||||||||    
T  33762843 agatggtcattgattgctgcaaggcttcccggtagaacagcgaatgatgtgaaaaactattggcacacaaatttgcggaagaag 33762760  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 33748867 - 33748779
Alignment:
Q  136 tatacatataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttg 224  Q
    |||||||||||||||||||| | |||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||| ||||||    
T  33748867 tatacatataatatagatggacgttgattgctgcaagacttcaaggtagaacagctaatgatgtgaaaaactattggaacactcatttg 33748779  T

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Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 33834987 - 33834899
Alignment:
Q  136 tatacatataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttg 224  Q
    |||||||||||||||||||| | |||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||| ||||||    
T  33834987 tatacatataatatagatggacgttgattgctgcaagacttcaaggtagaacagctaatgatgtgaaaaactattggaacactcatttg 33834899  T

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Target: chr5; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 33904474 - 33904390
Alignment:
Q  149 tagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaag 233  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||| || |||||| ||||||||||| | ||||||    
T  33904474 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacatttgagaaagaag 33904390  T

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Target: chr5; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 33679896 - 33679811
Alignment:
Q  147 tatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaa 232  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||||||||| || |||||| ||||| ||||||| |||||    
T  33679896 tatagatggtcattgattgctgcgaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttgcgcaagaa 33679811  T

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Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 147 - 233
Target Start/End: Complemental strand, 33865967 - 33865881
Alignment:
Q  147 tatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaag 233  Q
    |||||||||||||||||||||||||| || ||  |||||||||||||||||||||| || |||||| |||||||||| || ||||||    
T  33865967 tatagatggtcattgattgctgcaagactcccgggtagaacagctaatgatgtgaagaattattggcacacacatttacgcaagaag 33865881  T

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Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 33698613 - 33698534
Alignment:
Q  147 tatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcg 226  Q
    ||||||||||| ||||||||||||||||||||  |||| ||||||||||||||||| || |||||| ||||| |||||||    
T  33698613 tatagatggtctttgattgctgcaaggcttccgggtaggacagctaatgatgtgaagaattattggcacacaaatttgcg 33698534  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 33748715 - 33748665
Alignment:
Q  288 aaagctcatgaagttattaaacctcgacctataactctttcaactcattca 338  Q
    |||||||||||||||||||||||||| ||  ||||| ||||||||||||||    
T  33748715 aaagctcatgaagttattaaacctcgtccattaactttttcaactcattca 33748665  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 33834835 - 33834785
Alignment:
Q  288 aaagctcatgaagttattaaacctcgacctataactctttcaactcattca 338  Q
    ||||||||||||||||| |||||||| ||  ||||| ||||||||||||||    
T  33834835 aaagctcatgaagttatcaaacctcgtccattaactttttcaactcattca 33834785  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 33734571 - 33734534
Alignment:
Q  23 taaggttacacaatctcctagggaataggtaagcttcc 60  Q
    ||||||||||||| || |||||||||||||||||||||    
T  33734571 taaggttacacaaacttctagggaataggtaagcttcc 33734534  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 338
Target Start/End: Complemental strand, 33762719 - 33762658
Alignment:
Q  277 aggaaacaatgaaagctcatgaagttattaaacctcgacctataactctttcaactcattca 338  Q
    ||||||| |||||| | ||||||||||||||||||| ||||  || | ||||||||||||||    
T  33762719 aggaaactatgaaaacacatgaagttattaaacctcaacctcgaattttttcaactcattca 33762658  T

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Target: scaffold0023 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 141 - 245
Target Start/End: Original strand, 114199 - 114303
Alignment:
Q  141 atataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaaggttcttt 240  Q
    |||||||||||||||||||||||||| | |||||||||   |||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| |||    
T  114199 atataatatagatggtcattgattgcgggaaggcttccggctagaacagctaatgatgtcaaaaactattggcacacacatttgaggaagaaggttgttt 114298  T
Q  241 cagaa 245  Q
     ||||    
T  114299 tagaa 114303  T

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Target: scaffold0247 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 22142 - 22241
Alignment:
Q  137 atacatataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaaggtt 236  Q
    ||||||||  || ||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||| |||||||| || |||||||||    
T  22142 atacatatcgtacagatggtcattgattgctggaaggcttccaggtagaacagctaatgatgtgaaaaactattggaatacacatttacgaaagaaggtt 22241  T

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Target: scaffold0247; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 22284 - 22328
Alignment:
Q  279 gaaacaatgaaagctcatgaagttattaaacctcgacctataact 323  Q
    |||||||||||||||||||| |||||||||||||| |||||||||    
T  22284 gaaacaatgaaagctcatgaggttattaaacctcggcctataact 22328  T

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Target: scaffold0193 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 137 - 224
Target Start/End: Original strand, 25206 - 25293
Alignment:
Q  137 atacatataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttg 224  Q
    ||||||||||||||||||| |||||||||||||||| ||||   ||||| ||||||||||||||||||||||||||||||| ||||||    
T  25206 atacatataatatagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacacccatttg 25293  T

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Target: scaffold0193; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 24394 - 24433
Alignment:
Q  23 taaggttacacaatctcctagggaataggtaagcttccaa 62  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  24394 taaggttacacaacctcctagggaataggtaagcgtccaa 24433  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 21305953 - 21305875
Alignment:
Q  146 atatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttg 224  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||||||||||| ||||||||| ||||| |||||    
T  21305953 atatagatggtcattgattgctggaaggcttccgggtagaacagctaatgatgtgaagaactattggcacacaaatttg 21305875  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 21305827 - 21305761
Alignment:
Q  272 acctgaggaaacaatgaaagctcatgaagttattaaacctcgacctataactctttcaactcattca 338  Q
    |||| ||||||| ||||||||||||||||||||||||||||| ||||||||| | |||| |||||||    
T  21305827 acctaaggaaaccatgaaagctcatgaagttattaaacctcgtcctataactttgtcaagtcattca 21305761  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 5471194 - 5471280
Alignment:
Q  149 tagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaaggt 235  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||  |||||||||||||||||||||||| |||  |||||||||    
T  5471194 tagatggtcattgattgctggaaggcttccgggtagaacagctaatagtgtgaaaaactattggaacacacacttgttgaagaaggt 5471280  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 278 - 341
Target Start/End: Original strand, 5471317 - 5471380
Alignment:
Q  278 ggaaacaatgaaagctcatgaagttattaaacctcgacctataactctttcaactcattcatct 341  Q
    ||| ||||||||||||||  |||||||||||||| ||||||||||| |||||||||| ||||||    
T  5471317 ggagacaatgaaagctcaccaagttattaaacctagacctataactttttcaactcaatcatct 5471380  T

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Target: scaffold0001 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 148859 - 148773
Alignment:
Q  149 tagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaaggt 235  Q
    |||||||||||||||||||| |||||||||  | ||||||||||||||||| || ||||||||| ||||||| ||||  ||||||||    
T  148859 tagatggtcattgattgctggaaggcttccgggaagaacagctaatgatgtaaagaactattggcacacacacttgcacaagaaggt 148773  T

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