View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6182_low_13 (Length: 290)
Name: NF6182_low_13
Description: NF6182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6182_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 9882522 - 9882791
Alignment:
| Q |
1 |
tattgttactgaatttattactcatccatatgaaagttatatgcacagaaacacgcaagatctcacttgtctcgagtttcattccca-acactctcaatc |
99 |
Q |
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| T |
9882522 |
tattgttactgaatttattactcatccatatgaaagttatatgcacagaaacacacaagatctcactagtctcgagtttcattcctttacactctcaatc |
9882621 |
T |
|
| Q |
100 |
ttgcaataaatccttttaccatttgatgatatattactccattttgggttctctaatagatgaaaagatctaaaaatatgacatatttctactacataac |
199 |
Q |
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| T |
9882622 |
ttgcaataaatccttttaccatttgatgatatattactccattttgggatctctaatagatgaaaagatctaaaaatatgacatattgctactacataac |
9882721 |
T |
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| Q |
200 |
aataaattataaaattgagaatcaatacagggtccaaaattcatctaaagtccaaataccactgttaata |
269 |
Q |
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| T |
9882722 |
aataaattataaaattgagaatcaatacagggcccaaaaaccatctaaagtccaaatagcactgttaata |
9882791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 9902113 - 9902319
Alignment:
| Q |
22 |
tcatccatatgaaagttatatgcacagaaacacgcaagatctcacttgtctcgagtttcattcccaacac-tctcaatcttgcaataaatcctttt-acc |
119 |
Q |
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| T |
9902113 |
tcatccatatgaaagatatgtgcacacaatgactcaagatctcaataaactagagtttcattcccttccggtctcaatcttgaaataaatcctttttacc |
9902212 |
T |
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| Q |
120 |
atttgatgatatattactccattttgggttctctaatagatgaaaagatctaaaaatatgacatatttctactacataacaataaattataaaattgaga |
219 |
Q |
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| T |
9902213 |
atttgataatttagttctccattttgagttctccaataaattaaaagatctaaaaatatgacattatactactacataacaataaattataaaattcaga |
9902312 |
T |
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| Q |
220 |
atcaata |
226 |
Q |
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|||||| |
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| T |
9902313 |
gtcaata |
9902319 |
T |
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