View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6182_low_14 (Length: 282)

Name: NF6182_low_14
Description: NF6182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6182_low_14
NF6182_low_14
[»] scaffold0054 (1 HSPs)
scaffold0054 (22-267)||(2730-2975)
[»] chr1 (11 HSPs)
chr1 (22-267)||(6165046-6165291)
chr1 (22-264)||(16764534-16764776)
chr1 (22-267)||(10801565-10801811)
chr1 (25-265)||(29599261-29599509)
chr1 (31-265)||(324540-324782)
chr1 (25-265)||(26354865-26355115)
chr1 (43-265)||(48184100-48184330)
chr1 (144-229)||(26014422-26014507)
chr1 (25-97)||(26014504-26014576)
chr1 (145-203)||(17481113-17481171)
chr1 (25-123)||(17480997-17481092)
[»] scaffold0285 (1 HSPs)
scaffold0285 (22-267)||(8380-8625)
[»] chr8 (18 HSPs)
chr8 (23-267)||(22014702-22014946)
chr8 (25-265)||(29182585-29182833)
chr8 (25-265)||(22432301-22432549)
chr8 (41-265)||(774706-774940)
chr8 (41-265)||(27576624-27576856)
chr8 (124-265)||(780453-780594)
chr8 (124-265)||(18068436-18068576)
chr8 (25-109)||(1668130-1668214)
chr8 (25-109)||(16658845-16658929)
chr8 (25-109)||(38521236-38521320)
chr8 (49-123)||(11472393-11472467)
chr8 (167-218)||(1668023-1668074)
chr8 (167-218)||(16658738-16658789)
chr8 (41-203)||(43916025-43916194)
chr8 (25-109)||(6786462-6786547)
chr8 (167-229)||(6786344-6786406)
chr8 (170-218)||(38521376-38521424)
chr8 (25-70)||(780372-780417)
[»] chr5 (8 HSPs)
chr5 (25-265)||(32863509-32863753)
chr5 (25-265)||(10572564-10572812)
chr5 (25-265)||(3174025-3174273)
chr5 (43-107)||(43300201-43300265)
chr5 (41-107)||(19209138-19209204)
chr5 (41-107)||(23737909-23737975)
chr5 (167-218)||(18739528-18739581)
chr5 (43-107)||(41958626-41958690)
[»] chr7 (6 HSPs)
chr7 (25-265)||(6472254-6472502)
chr7 (25-262)||(9371671-9371916)
chr7 (33-231)||(35012992-35013200)
chr7 (25-109)||(21358032-21358116)
chr7 (43-107)||(44660336-44660400)
chr7 (190-265)||(21358173-21358247)
[»] chr4 (16 HSPs)
chr4 (25-265)||(21604287-21604535)
chr4 (25-231)||(54785198-54785413)
chr4 (25-265)||(46164376-46164624)
chr4 (25-231)||(47825803-47826017)
chr4 (25-265)||(8432990-8433238)
chr4 (25-109)||(21355892-21355976)
chr4 (49-123)||(38115452-38115526)
chr4 (25-109)||(13740262-13740346)
chr4 (25-109)||(23218230-23218314)
chr4 (25-109)||(45143997-45144081)
chr4 (25-109)||(45152766-45152850)
chr4 (167-221)||(21355773-21355827)
chr4 (170-218)||(23218373-23218421)
chr4 (167-218)||(45143890-45143941)
chr4 (167-218)||(45152659-45152710)
chr4 (167-207)||(13740402-13740442)
[»] chr2 (7 HSPs)
chr2 (25-265)||(25697577-25697825)
chr2 (25-109)||(3935382-3935466)
chr2 (25-109)||(38978383-38978467)
chr2 (167-218)||(3935522-3935573)
chr2 (167-214)||(38978523-38978570)
chr2 (149-203)||(8485586-8485640)
chr2 (25-74)||(32339602-32339651)
[»] chr6 (3 HSPs)
chr6 (25-265)||(32397092-32397342)
chr6 (42-230)||(9302904-9303096)
chr6 (173-265)||(16497344-16497435)
[»] chr3 (6 HSPs)
chr3 (25-265)||(9456275-9456523)
chr3 (25-109)||(21239460-21239544)
chr3 (25-109)||(52893456-52893540)
chr3 (43-109)||(2338842-2338908)
chr3 (170-218)||(2338967-2339015)
chr3 (167-218)||(52893349-52893400)
[»] scaffold1160 (1 HSPs)
scaffold1160 (43-229)||(2374-2558)
[»] scaffold1300 (1 HSPs)
scaffold1300 (59-123)||(970-1034)
[»] scaffold0393 (2 HSPs)
scaffold0393 (25-109)||(11179-11263)
scaffold0393 (167-218)||(11316-11367)
[»] scaffold1084 (1 HSPs)
scaffold1084 (49-113)||(1224-1288)


Alignment Details
Target: scaffold0054 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 2975 - 2730
Alignment:
Q  22 catatgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagaga 121  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2975 catatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagaga 2876  T
Q  122 tgtctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtgg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2875 tgtctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtgg 2776  T
Q  222 tggtggatgtaatgttcggtcgcttgctttggttgggagaagaata 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2775 tggtggatgtaatgttcggtcgcttgctttggttgggagaagaata 2730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 6165046 - 6165291
Alignment:
Q  22 catatgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagaga 121  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6165046 catatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagaga 6165145  T
Q  122 tgtctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtgg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6165146 tgtctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtgg 6165245  T
Q  222 tggtggatgtaatgttcggtcgcttgctttggttgggagaagaata 267  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  6165246 tggtggatgtaatgatcggtcgcttgctttggttgggagaagaata 6165291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 22 - 264
Target Start/End: Original strand, 16764534 - 16764776
Alignment:
Q  22 catatgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagaga 121  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16764534 catatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagaga 16764633  T
Q  122 tgtctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtgg 221  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16764634 tgtctctaaactaaagaatcaaaacagaagatggaggagtatgcagtggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtgg 16764733  T
Q  222 tggtggatgtaatgttcggtcgcttgctttggttgggagaaga 264  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  16764734 tggtggatgtaatgttcggtcgcttgctttggttgggagaaga 16764776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 10801565 - 10801811
Alignment:
Q  22 catatgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggttt-gttgtggagagag 120  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10801565 catatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggttttgttgtggagagag 10801664  T
Q  121 atgtctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtg 220  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10801665 atgtctctaaactgaagaatcgaaacagaagatggagaagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcacaagcggtggtgtg 10801764  T
Q  221 gtggtggatgtaatgttcggtcgcttgctttggttgggagaagaata 267  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||    
T  10801765 gtggtggatgtaatgttaggtggcttgctttggttgggagaagaata 10801811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 265
Target Start/End: Original strand, 29599261 - 29599509
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg- 123  Q
    ||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||     
T  29599261 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggt---ttgtggagagagatgg 29599357  T
Q  124 -----------tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcg 212  Q
               |||||||||| ||||||| | ||||||||| |||| |  ||| |||||||||||||||||||||| |||||||||||||||| || ||     
T  29599358 atggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggca 29599457  T
Q  213 gtggtgtggtggtggatgtaatgttcggtcg-cttgctttggttgggagaagaa 265  Q
    |||||||||||||||||||  |||||||| |  ||||||||| |||||||||||    
T  29599458 gtggtgtggtggtggatgt--tgttcggtggttttgctttggctgggagaagaa 29599509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 31 - 265
Target Start/End: Complemental strand, 324782 - 324540
Alignment:
Q  31 tcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg------- 123  Q
    ||||||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||| ||||   |||||||||||           
T  324782 tcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggcttgt---ggagagagatggatggag 324686  T
Q  124 -----tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtg 218  Q
         |||||||||| ||||||| | ||||||||| |||| |  ||| |||||||||||||||||||||| |||||||||||||||| || || ||||||    
T  324685 atagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtg 324586  T
Q  219 tggtggtggatgtaatgttcggtcg-cttgctttggttgggagaagaa 265  Q
    |||||||||||||  |||||||| |  ||||||||| |||||||||||    
T  324585 tggtggtggatgt--tgttcggtggttttgctttggctgggagaagaa 324540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 25 - 265
Target Start/End: Complemental strand, 26355115 - 26354865
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaa-tttcacattaacttacaagttacaacaattagggtttgttg-------tggag 116  Q
    ||||| ||||||||| ||||||||||||||||  | |||||||||| |||||||||| |||||||||||||||||||||||||||| |       ||||     
T  26355115 atgtaatcatcaaatcagaatcagaattgaaggaagttacattcaaatttcacattaccttacaagttacaacaattagggtttgtggagaaggatggat 26355016  T
Q  117 agagatg--tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggt 214  Q
     |||||   ||||| ||||  |||||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || || |||||    
T  26355015 ggagatagctctctgaactatagaatcaatacagaagatggaggaggatgcggcggtgatggatggagaaggaggagagtggtcgcggttcgccggcggt 26354916  T
Q  215 ggtgtggtggtggatgtaatgttcggtcg--cttgctttggttgggagaagaa 265  Q
    |||| |||||||||  || ||||||||||   ||||||||| |||||||||||    
T  26354915 ggtgcggtggtgga--tattgttcggtcggatttgctttggctgggagaagaa 26354865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 43 - 265
Target Start/End: Complemental strand, 48184330 - 48184100
Alignment:
Q  43 aatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg------------tctctaa 130  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||            |||||||    
T  48184330 aatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt---ggagagagatggatggagatagctctctaa 48184234  T
Q  131 actgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtggtggtggatg 230  Q
    ||| ||||||| | ||||||||| |||| |  ||| ||||||||||||||||||| || |||||||||||||||  || || ||||||||||||||||||    
T  48184233 actaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaagaagaagagtggtcgcggcttgccggcagtggtgtggtggtggatg 48184134  T
Q  231 taatgttcggtcg-cttgctttggttgggagaagaa 265  Q
    |  |||||||| |  ||||||||| |||||||||||    
T  48184133 t--tgttcggtggttttgctttggctgggagaagaa 48184100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 26014507 - 26014422
Alignment:
Q  144 aacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtggtggtggat 229  Q
    |||||||||| |||| |  ||| |||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||    
T  26014507 aacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccagcagtggtgtggtggtggat 26014422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 26014576 - 26014504
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaaca 97  Q
    ||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  26014576 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaaca 26014504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 17481113 - 17481171
Alignment:
Q  145 acagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggc 203  Q
    |||||||||||||||| ||||| |||||||||||||||||||||| |||||||| ||||    
T  17481113 acagaagatggaggaggatgcaccggtgatggatggagaaggaggtgagtggtcacggc 17481171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 17480997 - 17481092
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg 123  Q
    ||||| ||||||||  | ||||| | ||||||  || ||||||||||||||||||| ||||||| |||||| ||||||| |   |||||||||||||||    
T  17480997 atgtaatcatcaaagaataatcatatttgaaggaaaatacattcaatttcacattaccttacaatttacaagaattaggat---ttgtggagagagatg 17481092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 8380 - 8625
Alignment:
Q  22 catatgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagaga 121  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8380 catatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagaga 8479  T
Q  122 tgtctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtgg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8480 tgtctctaaactgaagaatcgaaacagaagatggaggagtatgcagcagtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtgg 8579  T
Q  222 tggtggatgtaatgttcggtcgcttgctttggttgggagaagaata 267  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  8580 tggtggatgtaatgtttggtcgcttgctttggttgggagaagaata 8625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 23 - 267
Target Start/End: Complemental strand, 22014946 - 22014702
Alignment:
Q  23 atatgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagat 122  Q
    ||||||| ||||||||  | ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22014946 atatgtaatcatcaaacaataatcataattgaaggaaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagat 22014847  T
Q  123 gtctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtggt 222  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22014846 gtctctaaactgaataatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtggt 22014747  T
Q  223 ggtggatgtaatgttcggtcgcttgctttggttgggagaagaata 267  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  22014746 ggtggatgtactgttcggtcgcttgctttggttgggagaagaata 22014702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 25 - 265
Target Start/End: Original strand, 29182585 - 29182833
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg- 123  Q
    ||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||     
T  29182585 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt---ggagagagatgg 29182681  T
Q  124 -----------tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcg 212  Q
               |||||||||| ||||||| | ||||||||| |||| |  ||| |||||||||||||||||||||| |||||||||||||||| |||||     
T  29182682 atggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccagca 29182781  T
Q  213 gtggtgtggtggtggatgtaatgttcggtcg-cttgctttggttgggagaagaa 265  Q
    |||||||||||||||||||  |||||||| |  ||||||||| |||||||||||    
T  29182782 gtggtgtggtggtggatgt--tgttcggtggttttgctttggctgggagaagaa 29182833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 265
Target Start/End: Original strand, 22432301 - 22432549
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg- 123  Q
    ||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||     
T  22432301 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggt---ttgtggagagagatgg 22432397  T
Q  124 -----------tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcg 212  Q
               |||||||||| ||||||| | ||||||||| |||| |  ||| |||||||||||||||||||||| |||||||||||||||| || ||     
T  22432398 atggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggca 22432497  T
Q  213 gtggtgtggtggtggatgtaatgttcggtcg-cttgctttggttgggagaagaa 265  Q
    |||||||||||||||||||  |||||||| |  ||||||||| |||||||||||    
T  22432498 gtggtgtggtggtggatgt--tgttcggtggttttgctttggctgggagaagaa 22432549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 41 - 265
Target Start/End: Original strand, 774706 - 774940
Alignment:
Q  41 agaatcagaattgaagacaattacattcaa-tttcacattaacttacaagttacaacaattagggtttgttg-------tggagagagatg--tctctaa 130  Q
    ||||||||||||||||  |||||||||||| |||||||||| |||| ||||||||||||||||||||||| |       ||||  |||||   |||||||    
T  774706 agaatcagaattgaaggaaattacattcaaatttcacattaccttataagttacaacaattagggtttgtggagaaggatggatggagatagctctctaa 774805  T
Q  131 actgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtggtggtggatg 230  Q
    ||| ||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||    
T  774806 actaaagaatcaatacagaagatggaggaggatgcggcggtgatggatggagaaggaggagagtggtcgcggttcgccggcggtggtgtggtggtggatg 774905  T
Q  231 taatgttcggtcg--cttgctttggttgggagaagaa 265  Q
    |  ||||||||||   ||||||||| |||||||||||    
T  774906 t--tgttcggtcggatttgctttggctgggagaagaa 774940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 41 - 265
Target Start/End: Complemental strand, 27576856 - 27576624
Alignment:
Q  41 agaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg------------tctct 128  Q
    ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||            |||||    
T  27576856 agaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt---ggagagagatggatggagatagctctct 27576760  T
Q  129 aaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtggtggtgga 228  Q
    ||||| ||||||| | ||||||||| |||| |  ||| |||||||||||||||||||||| |||||||||||||||| || || ||||||||||||||||    
T  27576759 aaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtgga 27576660  T
Q  229 tgtaatgttcggtcg-cttgctttggttgggagaagaa 265  Q
    |||  |||||||| |  ||||||||| |||||||||||    
T  27576659 tgt--tgttcggtggttttgctttggctgggagaagaa 27576624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 124 - 265
Target Start/End: Original strand, 780453 - 780594
Alignment:
Q  124 tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtggtg 223  Q
    |||||||||| ||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || || ||||||||||||||    
T  780453 tctctaaactaaagaatcaatacagaagatggaggaggatgcggcggtgatggatggagaaggaggagagtggtcgcggttcgccggcggtggtgtggtg 780552  T
Q  224 gtggatgtaatgttcggtcg--cttgctttggttgggagaagaa 265  Q
    ||||||||  ||||||||||   ||||||||| |||||||||||    
T  780553 gtggatgt--tgttcggtcggatttgctttggctgggagaagaa 780594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 124 - 265
Target Start/End: Complemental strand, 18068576 - 18068436
Alignment:
Q  124 tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtggtg 223  Q
    |||||||||| ||||||| | ||||||||| |||||| |||| |||||||||||||||||||||| |||||||||||||||| || || |||||||||||    
T  18068576 tctctaaactaaagaatcaatacagaagattgaggaggatgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtg 18068477  T
Q  224 gtggatgtaatgttcggtcg-cttgctttggttgggagaagaa 265  Q
    ||||||||  |||||||| |  ||||||||| |||||||||||    
T  18068476 gtggatgt--tgttcggtggttttgctttggctgggagaagaa 18068436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 1668214 - 1668130
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 109  Q
    ||||| ||||||||| | ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1668214 atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 1668130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 16658929 - 16658845
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 109  Q
    ||||| ||||||||| | ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16658929 atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 16658845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 38521236 - 38521320
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 109  Q
    ||||| ||||||||| | ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38521236 atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 38521320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 11472393 - 11472467
Alignment:
Q  49 aattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg 123  Q
    ||||||||  |||||||||||||||||||||| ||||||| ||||||||||||||||||  ||||||||||||||    
T  11472393 aattgaaggaaattacattcaatttcacattaccttacaaattacaacaattagggttttctgtggagagagatg 11472467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 1668074 - 1668023
Alignment:
Q  167 gcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtg 218  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1668074 gcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtg 1668023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 16658789 - 16658738
Alignment:
Q  167 gcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtg 218  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16658789 gcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtg 16658738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 41 - 203
Target Start/End: Complemental strand, 43916194 - 43916025
Alignment:
Q  41 agaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg--------tctctaaac 132  Q
    ||||||||| ||||||  ||||||||| || ||||||||  ||||||| |||||||||| ||||||| |   |||||||||||        |||||||||    
T  43916194 agaatcagatttgaaggaaattacattaaaattcacatttccttacaatttacaacaatcagggtttat---ggagagagatggagatagctctctaaac 43916098  T
Q  133 tgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaagg--aggagagtggtcgcggc 203  Q
    ||||||||| | |||||| || |||||| ||||  |||||||||||||||||||  | |||||||||||||||    
T  43916097 tgaagaatcaacacagaaaatagaggaggatgcgacggtgatggatggagaaggaaatgagagtggtcgcggc 43916025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 6786547 - 6786462
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaa-tttcacattaacttacaagttacaacaattagggtttgt 109  Q
    ||||| ||||||||| | ||||||||||||||  | |||||||||| |||||||||| ||||||||||||| ||||||||||||||    
T  6786547 atgtaatcatcaaatcaaaatcagaattgaaggaagttacattcaaatttcacattaccttacaagttacagcaattagggtttgt 6786462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 6786406 - 6786344
Alignment:
Q  167 gcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtggtggtggat 229  Q
    |||||||||||||||||||||||||||||||||||| ||  | |||||||| |||||||||||    
T  6786406 gcggtgatggatggagaaggaggagagtggtcgcggttcgacggcggtggtttggtggtggat 6786344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 38521376 - 38521424
Alignment:
Q  170 gtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtg 218  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  38521376 gtgatggatggagaaggagaagagtggtcgcggctcaccggcggtggtg 38521424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 780372 - 780417
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaa 70  Q
    ||||| ||||||||| ||||||||||||||||  ||||||||||||    
T  780372 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 780417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 25 - 265
Target Start/End: Complemental strand, 32863753 - 32863509
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttg---tgga--gaga 119  Q
    ||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||| |   ||||  ||||    
T  32863753 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagatggatggaga 32863654  T
Q  120 gatgtctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgt 219  Q
     |  |||||||||| ||||||| | ||||||||| |||| |  ||| |||||||||||||||||||||| |||||||||||||||| || || |||||||    
T  32863653 tagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgt 32863554  T
Q  220 ggtggtggatgtaatgttcggtcg-cttgctttggttgggagaagaa 265  Q
    ||||||||||||  |||||||| |  ||||||||| |||||||||||    
T  32863553 ggtggtggatgt--tgttcggtggttttgctttggctgggagaagaa 32863509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 25 - 265
Target Start/End: Complemental strand, 10572812 - 10572564
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg- 123  Q
    ||||| ||||||||| ||||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||     
T  10572812 atgtaatcatcaaatcagaatcacaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt---ggagagagatgg 10572716  T
Q  124 -----------tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcg 212  Q
               |||||||||| ||||||| | ||||||||| |||| |  ||| |||||||||||||||||||||| |||||||||||||||| || ||     
T  10572715 atggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggca 10572616  T
Q  213 gtggtgtggtggtggatgtaatgttcggtcg-cttgctttggttgggagaagaa 265  Q
    |||||||||||||||||||  |||||||| |  ||||||||| |||||||||||    
T  10572615 gtggtgtggtggtggatgt--tgttcggtggttttgctttggctgggagaagaa 10572564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 265
Target Start/End: Complemental strand, 3174273 - 3174025
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg- 123  Q
    ||||| ||||||||| | ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||     
T  3174273 atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt---ggagagagatgg 3174177  T
Q  124 -----------tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcg 212  Q
               |||||||||| ||||||| | ||||||||| |||| |  ||| |||||||||||||||||||||| |||||||||||||||| || ||     
T  3174176 atggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggca 3174077  T
Q  213 gtggtgtggtggtggatgtaatgttcggtcg-cttgctttggttgggagaagaa 265  Q
    |||||||||||||||||||  |||||||| |  ||||||||| |||||||||||    
T  3174076 gtggtgtggtggtggatgt--tgttcggtggttttgctttggctgggagaagaa 3174025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 43300265 - 43300201
Alignment:
Q  43 aatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggttt 107  Q
    |||||||||||||   |||||||||||||||||||||| |||| || ||||||||||||||||||    
T  43300265 aatcagaattgaacgaaattacattcaatttcacattaccttataatttacaacaattagggttt 43300201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 19209138 - 19209204
Alignment:
Q  41 agaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggttt 107  Q
    ||||||||| ||||||  |||||||||||||||||| ||| ||||| | ||||||||||||||||||    
T  19209138 agaatcagatttgaaggaaattacattcaatttcacgttaccttacgatttacaacaattagggttt 19209204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 23737975 - 23737909
Alignment:
Q  41 agaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggttt 107  Q
    ||||||||| ||||||  |||||||||||||||||  ||| ||||||| ||||||||||||||||||    
T  23737975 agaatcagatttgaaggaaattacattcaatttcatgttaccttacaatttacaacaattagggttt 23737909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 18739528 - 18739581
Alignment:
Q  167 gcggtgatggatggagaaggaggagagtgg--tcgcggctcaccagcggtggtg 218  Q
    |||||||||||||||||| |||||||||||  |||||||||||| |||||||||    
T  18739528 gcggtgatggatggagaaagaggagagtggtctcgcggctcaccggcggtggtg 18739581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 41958626 - 41958690
Alignment:
Q  43 aatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggttt 107  Q
    |||||||||||||   |||||||||||||||||||||| |||  || | ||||||||||||||||    
T  41958626 aatcagaattgaacgaaattacattcaatttcacattaccttgtaattaacaacaattagggttt 41958690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 265
Target Start/End: Original strand, 6472254 - 6472502
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg- 123  Q
    ||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||     
T  6472254 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggt---ttgtggagagagatgg 6472350  T
Q  124 -----------tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcg 212  Q
               |||||||||| ||||||| | ||||||||| |||| |  ||| |||||||||||||||||||||| |||||||||||||||| || ||     
T  6472351 atggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggca 6472450  T
Q  213 gtggtgtggtggtggatgtaatgttcggtcg-cttgctttggttgggagaagaa 265  Q
    |||||||||||||||||||  |||||||| |  ||||||||| |||||||||||    
T  6472451 gtggtgtggtggtggatgt--tgttcggtggttttgctttggctgggagaagaa 6472502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 262
Target Start/End: Complemental strand, 9371916 - 9371671
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg- 123  Q
    ||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||     
T  9371916 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggt---ttgtggagagagatgg 9371820  T
Q  124 -----------tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcg 212  Q
               |||||||||| ||||||| | ||||||||| |||| |  ||| |||||||||||||||||||||| |||||||||||||||| || ||     
T  9371819 atggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggca 9371720  T
Q  213 gtggtgtggtggtggatgtaatgttcggtcg-cttgctttggttgggagaa 262  Q
    |||||||||||||||||||  |||||||| |  ||||||||| ||||||||    
T  9371719 gtggtgtggtggtggatgt--tgttcggtggttttgctttggctgggagaa 9371671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 33 - 231
Target Start/End: Original strand, 35012992 - 35013200
Alignment:
Q  33 atcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg--------- 123  Q
    ||||||| |||||||| |||||||  |||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||             
T  35012992 atcaaatcagaatcaggattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggt---ttgtggagagagatggatggagat 35013088  T
Q  124 ---tctctaaactgaagaatcgaaacagaagatgga-ggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgt 219  Q
       |||||||||| ||||||| | ||||||||| || || |  ||| |||||||||||||||||||||| |||||||||||||| | || || |||||||    
T  35013089 agctctctaaactaaagaatcaatacagaagattgagggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggcccgccggcagtggtgt 35013188  T
Q  220 ggtggtggatgt 231  Q
    ||||||||||||    
T  35013189 ggtggtggatgt 35013200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 21358032 - 21358116
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 109  Q
    ||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21358032 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 21358116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 44660400 - 44660336
Alignment:
Q  43 aatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggttt 107  Q
    |||||||||||||   |||||||||||||||||||||| |||| || ||| ||||||||||||||    
T  44660400 aatcagaattgaacgaaattacattcaatttcacattaccttataatttagaacaattagggttt 44660336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 265
Target Start/End: Original strand, 21358173 - 21358247
Alignment:
Q  190 agagtggtcgcggctcaccagcggtggtgtggtggtggatgtaatgttcggtcg-cttgctttggttgggagaagaa 265  Q
    |||||||||||||||| || || |||||||||||||||||||  |||||||| |  ||||||||| |||||||||||    
T  21358173 agagtggtcgcggctcgccggcagtggtgtggtggtggatgt--tgttcggtggttttgctttggctgggagaagaa 21358247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 265
Target Start/End: Complemental strand, 21604535 - 21604287
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg- 123  Q
    ||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||     
T  21604535 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggt---ttgtggagagagatgg 21604439  T
Q  124 -----------tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcg 212  Q
               |||||||||| ||||||| | ||||||||| |||| |  ||| |||||||||||||||||||||| |||||||||||||||| || ||     
T  21604438 atggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggca 21604339  T
Q  213 gtggtgtggtggtggatgtaatgttcggtcg-cttgctttggttgggagaagaa 265  Q
    |||||||||||||||||||  |||||||| |  ||||||||| |||||||||||    
T  21604338 gtggtgtggtggtggatgt--tgttcggtggttttgctttggctgggagaagaa 21604287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 54785198 - 54785413
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg- 123  Q
    ||||| ||||||||| ||||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||     
T  54785198 atgtaatcatcaaatcagaatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt---ggagagagatgg 54785294  T
Q  124 -----------tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcg 212  Q
               || ||||||| ||||||| | ||||||||| |||||| |||| ||||||||||||||||||||||||||||||| ||||||| || |||    
T  54785295 atggagacagctccctaaactaaagaatcaatacagaagatcgaggaggatgcggcggtgatggatggagaaggaggagagtggttgcggctcgccggcg 54785394  T
Q  213 gtggtgtggtggtggatgt 231  Q
    |||||||||||||||||||    
T  54785395 gtggtgtggtggtggatgt 54785413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 25 - 265
Target Start/End: Original strand, 46164376 - 46164624
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg- 123  Q
    ||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||     
T  46164376 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggt---ttgtggagagagatgg 46164472  T
Q  124 -----------tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcg 212  Q
               |||||||||| ||||||| | | ||||||| |||| |  ||| |||||||||||||||||||||| |||||||||||||||| || ||     
T  46164473 atggagatagctctctaaactaaagaatcaatatagaagatagaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggca 46164572  T
Q  213 gtggtgtggtggtggatgtaatgttcggtcg-cttgctttggttgggagaagaa 265  Q
    |||||||||||||||||||  |||||||| |  ||||||||| |||||||||||    
T  46164573 gtggtgtggtggtggatgt--tgttcggtagttttgctttggctgggagaagaa 46164624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 47826017 - 47825803
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg- 123  Q
    ||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||     
T  47826017 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggt---ttgtggagagagatgg 47825921  T
Q  124 -----------tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcg 212  Q
               |||||||||| ||||||| | ||||||||| |||| |  ||| |||||||||||||||||||||| |||||||||||||||| || ||     
T  47825920 atggagatagctctctaaactaaagaatcaatacagaagattgagg-gggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggca 47825822  T
Q  213 gtggtgtggtggtggatgt 231  Q
    |||||||||||||||||||    
T  47825821 gtggtgtggtggtggatgt 47825803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 265
Target Start/End: Original strand, 8432990 - 8433238
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg- 123  Q
    ||||| ||||||||| ||||||||||||||||  ||| |||||||||||||||||| ||||||||| ||||||||||||||||||   |||||||||||     
T  8432990 atgtaatcatcaaatcagaatcagaattgaaggaaataacattcaatttcacattaccttacaagtaacaacaattagggtttgt---ggagagagatgg 8433086  T
Q  124 -----------tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcg 212  Q
               | |||||||| ||||||| | ||||||||| |||| |  ||| |||||||||||||||||||||| |||||||||||||||| || ||     
T  8433087 atggagatagctttctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggca 8433186  T
Q  213 gtggtgtggtggtggatgtaatgttcggtcg-cttgctttggttgggagaagaa 265  Q
    |||||||||||||||||||  |||||||| |  ||||||||| |||||||||||    
T  8433187 gtggtgtggtggtggatgt--tgttcggtggttttgctttggctgggagaagaa 8433238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 21355976 - 21355892
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 109  Q
    ||||| ||||||||| ||||||||||||||||  |||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  21355976 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacgttaccttacaagttacaacaattagggtttgt 21355892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 38115526 - 38115452
Alignment:
Q  49 aattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg 123  Q
    ||||||||  |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  38115526 aattgaaggaaattacattcaatttcacattaccttacaaattacaacaattagggtttgttgtggagagagatg 38115452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 13740262 - 13740346
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 109  Q
    ||||| ||||||||| | ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13740262 atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 13740346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 23218230 - 23218314
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 109  Q
    ||||| ||||||||| | ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23218230 atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 23218314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 45144081 - 45143997
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 109  Q
    ||||| ||||||||| | ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45144081 atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 45143997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 45152850 - 45152766
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 109  Q
    ||||| ||||||||| | ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45152850 atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 45152766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 21355827 - 21355773
Alignment:
Q  167 gcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtgg 221  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21355827 gcggtgatggatggagaaggaggagagtggtcgcggctcacccgcggtggtgtgg 21355773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 23218373 - 23218421
Alignment:
Q  170 gtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtg 218  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23218373 gtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtg 23218421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 45143941 - 45143890
Alignment:
Q  167 gcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtg 218  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  45143941 gcggtgatggatggagaaggaggagagtgatcgcggctcaccggcggtggtg 45143890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 45152710 - 45152659
Alignment:
Q  167 gcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtg 218  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  45152710 gcggtgatggatggagaaggaggagagtgatcgcggctcaccggcggtggtg 45152659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 13740402 - 13740442
Alignment:
Q  167 gcggtgatggatggagaaggaggagagtggtcgcggctcac 207  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13740402 gcggtgatggatggagaaggaggagagtggtcgcggctcac 13740442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 265
Target Start/End: Original strand, 25697577 - 25697825
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg- 123  Q
    ||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||| ||||||||||||||||||   |||||||||||     
T  25697577 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagtaacaacaattagggtttgt---ggagagagatgg 25697673  T
Q  124 -----------tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcg 212  Q
               |||||||||| ||||||| | ||||||||| |||| |  ||| |||||||||||||||||||||| |||||||||||||||| |||||     
T  25697674 atggagatagctctctaaactaaagaatctatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccagca 25697773  T
Q  213 gtggtgtggtggtggatgtaatgttcggtcg-cttgctttggttgggagaagaa 265  Q
    |||||||||||||||||||  |||||||| |  ||||||||| |||||||||||    
T  25697774 gtggtgtggtggtggatgt--tgttcggtggttttgctttggctgggagaagaa 25697825  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 3935382 - 3935466
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 109  Q
    ||||| ||||||||||| ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3935382 atgtaatcatcaaattataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 3935466  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 38978383 - 38978467
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 109  Q
    ||||| ||||||||| | ||||| ||||||||  ||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  38978383 atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacactaccttacaagttacaacaattagggtttgt 38978467  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 3935522 - 3935573
Alignment:
Q  167 gcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtg 218  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3935522 gcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtg 3935573  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 38978523 - 38978570
Alignment:
Q  167 gcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggt 214  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||    
T  38978523 gcggtgatggatggagaaggaggagagtgatcgcggctcaccggcggt 38978570  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 8485586 - 8485640
Alignment:
Q  149 aagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggc 203  Q
    |||||||||||| ||||  | |||||||||||||||||||| |||||||||||||    
T  8485586 aagatggaggaggatgcgccagtgatggatggagaaggaggtgagtggtcgcggc 8485640  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 32339651 - 32339602
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttc 74  Q
    ||||| ||||||||| ||||||| ||||||||| ||||||||||||||||    
T  32339651 atgtaatcatcaaatcagaatcataattgaagaaaattacattcaatttc 32339602  T

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Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 25 - 265
Target Start/End: Complemental strand, 32397342 - 32397092
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaa-tttcacattaacttacaagttacaacaattagggtttgttg-------tggag 116  Q
    ||||| ||||||||| ||||||||||||||||  |||||||||||| |||||||||| |||| ||||||||||||||||||||||| |       ||||     
T  32397342 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaaatttcacattaccttataagttacaacaattagggtttgtggagaaggatggat 32397243  T
Q  117 agagatg--tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggt 214  Q
     |||||   |||||||||| ||||||| |   |||||||||||||| |||| |||||||||||||||| |||||||||||||||| || || || |||||    
T  32397242 ggagatagctctctaaactaaagaatcaattaagaagatggaggaggatgcggcggtgatggatggagcaggaggagagtggtcggggatcgccggcggt 32397143  T
Q  215 ggtgtggtggtggatgtaatgttcggtcg--cttgctttggttgggagaagaa 265  Q
    |||||||||||||||||  ||||||||||   ||||||||| |||||||||||    
T  32397142 ggtgtggtggtggatgt--tgttcggtcggatttgctttggctgggagaagaa 32397092  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 230
Target Start/End: Complemental strand, 9303096 - 9302904
Alignment:
Q  42 gaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg--------tctctaaact 133  Q
    |||||| ||||||||  |||||||||||||||||||||| ||| ||||||  ||||||||||||||||   |||||||||||        ||||| ||||    
T  9303096 gaatcaaaattgaaggaaattacattcaatttcacattacctttcaagttt-aacaattagggtttgt---ggagagagatggagataactctctgaact 9303001  T
Q  134 gaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcg-cggctcaccagcggtggtgtggtggtggatg 230  Q
    | |||||| | | ||||||||||| || ||||||||||||||||||||||||||||||||||||||  ||||||| | ||||||||||||||||||||    
T  9303000 ggagaatcaatatagaagatggagtaggatgcagcggtgatggatggagaaggaggagagtggtcgtgggctcacga-cggtggtgtggtggtggatg 9302904  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 173 - 265
Target Start/End: Original strand, 16497344 - 16497435
Alignment:
Q  173 atggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtggtggtggatgtaatgttcggtcg-cttgctttggttgggagaagaa 265  Q
    |||||||||||||||| |||||||||||||||| || || |||||||||||||||||||  |||||||| |  ||||||||| |||||||||||    
T  16497344 atggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgt--tgttcggtggttttgctttggctgggagaagaa 16497435  T

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Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 265
Target Start/End: Complemental strand, 9456523 - 9456275
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg- 123  Q
    ||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||| ||| ||||||||||||||||||||   |||||||||||||||     
T  9456523 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattacctttcaagttacaacaattagggt---ttgtggagagagatgg 9456427  T
Q  124 -----------tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcg 212  Q
               | |||||||| ||||||| | ||||||||| |||| |  ||| |||||||||||||||||||||| ||||||||||| |||| || ||     
T  9456426 atggagatagctgtctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcagctcgccggca 9456327  T
Q  213 gtggtgtggtggtggatgtaatgttcggtcg-cttgctttggttgggagaagaa 265  Q
    |||||||||||||||||||  |||||||| |  ||||||||| |||||||||||    
T  9456326 gtggtgtggtggtggatgt--tgttcggtggttttgctttggctgggagaagaa 9456275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 21239544 - 21239460
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 109  Q
    ||||| ||||||||| | ||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21239544 atgtaatcatcaaatcataatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 21239460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 52893540 - 52893456
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 109  Q
    ||||| ||||||||| | ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  52893540 atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 52893456  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 2338842 - 2338908
Alignment:
Q  43 aatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 109  Q
    ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2338842 aatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 2338908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 2338967 - 2339015
Alignment:
Q  170 gtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtg 218  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2338967 gtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtg 2339015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 52893400 - 52893349
Alignment:
Q  167 gcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtg 218  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  52893400 gcggtgatggatggagaaggaggagagtgatcgcggctcaccggcggtggtg 52893349  T

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Target: scaffold1160 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 229
Target Start/End: Complemental strand, 2558 - 2374
Alignment:
Q  43 aatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg--------tctctaaactg 134  Q
    ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||        |||||||||||    
T  2558 aatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt---ggagagagatggagatagctctctaaactg 2462  T
Q  135 aagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtggtggtggat 229  Q
    |||||     | || | || | || |      |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2461 aagaaggaggagagta-atcgcggcg------gcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtgtggtggtggat 2374  T

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Target: scaffold1300 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 970 - 1034
Alignment:
Q  59 aattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg 123  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  970 aattacattcaatttcacattaccttacaaattacaacaattagggtttgttgtggagagagatg 1034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 11179 - 11263
Alignment:
Q  25 atgtactcatcaaattagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 109  Q
    ||||| ||||||||| | ||||| ||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  11179 atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattaggatttgt 11263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 11316 - 11367
Alignment:
Q  167 gcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtg 218  Q
    |||||||||||||||||||||||| |||||||||||||||||  ||||||||    
T  11316 gcggtgatggatggagaaggaggaaagtggtcgcggctcaccgtcggtggtg 11367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1084 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1084
Description:

Target: scaffold1084; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 1288 - 1224
Alignment:
Q  49 aattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtg 113  Q
    ||||||||  |||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  1288 aattgaaggaaattacattcaatttcacattaccttacaaattacaacaattagtgtttgttgtg 1224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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