View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6182_low_16 (Length: 277)
Name: NF6182_low_16
Description: NF6182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6182_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 54916884 - 54916630
Alignment:
| Q |
10 |
atgataagaacaacataagtccatgtcacattctactctgttctatgaagcattgatagtgaacttttttagatggcatgtgtagatacaccaaagatat |
109 |
Q |
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| T |
54916884 |
atgataagaacaacataagtccatgtcacattctactccgttctatgaagcattgatagtgaacttttttagatggtatgtgtagatacaccaaagatat |
54916785 |
T |
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| Q |
110 |
atgtaggtctatgtcatacatctcgtgtatatgctatgtttgagggatttattttgctaaattgagactccatttatctcatggctggattttaagaaac |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
54916784 |
atgtaggtctatgtcatacatctcgtgtatatgctatgtttgagggatttattttgctaaattgagactccatttatcttatggctggattttaagaaac |
54916685 |
T |
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| Q |
210 |
cgtgctttctgtcattggcggttgcacacttactgttttttgacaggtgagtttt |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54916684 |
cgtgctttctgtcattggcggttgcacacttactgttttttgacaggtgagtttt |
54916630 |
T |
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