View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6182_low_2 (Length: 683)
Name: NF6182_low_2
Description: NF6182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6182_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 18 - 554
Target Start/End: Original strand, 32230408 - 32230940
Alignment:
| Q |
18 |
tttatttatctctgcatgttatatatgtacgttttgtgccaagatttatcaaagtttcttactaaaggaacaatactacactattactttcagcatcatc |
117 |
Q |
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| T |
32230408 |
tttatttatctctgcatgttatatatgt----tttgtgccaagatttatcaaagtttcttactaaaggaacaatactacactattactttcagcatcatc |
32230503 |
T |
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| Q |
118 |
gataaacaaagacaacaaagtaagatttcatttgcttatcagtagtcaacaatacgttattacttgcaaatatggataaaaaggtaatttaatcaatata |
217 |
Q |
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| T |
32230504 |
gataaacaaagacaacaaagtaagatttcatttgcttatcagtagtcaacaatacgttattacttgcaaatatggataaaaaggtaatttaatcaatata |
32230603 |
T |
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| Q |
218 |
aaaataaatttacaattgttccattcctcccaaattgaaggggatgcaaaatgtgaataaatgtgattgaatggatgccattgaattcctttctattcca |
317 |
Q |
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| T |
32230604 |
aaaataaatttacaattgttccattcctcccaaattgaaggggatgcaaaatgtgaataaatgtgattgaatggatgccatcgaattcctttctatttca |
32230703 |
T |
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| Q |
318 |
ctcttttaaagactattaaaacaatataacactatcttattctacttcattccatcaatcaaaatataaccttgagtttgtgttagtggaacatcaaaat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
32230704 |
ctcttttaaagactattaaaacaatataacactatcttattctacttcattccatcaatcaaaatataaccttgagtttgtgttattggaacattaaaat |
32230803 |
T |
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| Q |
418 |
acatacgtggaatgtgataccgcatatgtttatttgtctttatacttatgtcttacttttgattttctaaaagtaacaaacattgagaaaatacacataa |
517 |
Q |
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| T |
32230804 |
acatacttggaatgtgataccgcatatgtttatttatctttatacttgtgtcttacttttgattttctaaaagtaacaaacattgagaatatacacataa |
32230903 |
T |
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| Q |
518 |
aaatcaaagggcacaatatttgacatcaaagttttaa |
554 |
Q |
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| T |
32230904 |
aaatcaaagggcacaatatttgacatcaaagttttaa |
32230940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 560 - 680
Target Start/End: Original strand, 32230981 - 32231101
Alignment:
| Q |
560 |
catattatagaaagtatgatcaccaattaaattagcatttcattttgcaaattgttaaatatatcatctaaattataaaatgtcacttaaaatggtctca |
659 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32230981 |
catattatagaaagtatgatcaccaattaaattagcatttcattttgcaaattgttaaatatatcatctaaattataaaatgtcacttaaaatggtctca |
32231080 |
T |
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| Q |
660 |
atttgttgagaataatctacc |
680 |
Q |
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| T |
32231081 |
gtttgttgagaataatatacc |
32231101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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