View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6182_low_20 (Length: 251)
Name: NF6182_low_20
Description: NF6182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6182_low_20 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 38296918 - 38296996
Alignment:
| Q |
173 |
gcattatcttttaagacagttttagattccaactccattcgtaaaaaagacaagacgggatataagtcctatccagcat |
251 |
Q |
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| T |
38296918 |
gcattatctttcaagacagttttggattccaactccattcgtaaaaaagacaagacggggtatgagtcctatccagcat |
38296996 |
T |
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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 38296756 - 38296826
Alignment:
| Q |
11 |
cacagagaagtctgtcnnnnnnnggcagcactacaagtagttaaaagccatgacaacaacacaccctattg |
81 |
Q |
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| T |
38296756 |
cacagagaagtctgtcaaaaaaaggcagcactacaagtagttaaaagccatgacagcaacacaccctattg |
38296826 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 24018451 - 24018401
Alignment:
| Q |
197 |
gattccaactccattcgtaaaaaagacaagacgggatataagtcctatcca |
247 |
Q |
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| T |
24018451 |
gattccaacaccattcgtaaaaaagacaggacgggaaatgagttctatcca |
24018401 |
T |
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