View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6182_low_21 (Length: 250)
Name: NF6182_low_21
Description: NF6182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6182_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 46554783 - 46554648
Alignment:
| Q |
24 |
gtggtccttccttgtcttctgcatacgctatttgggttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggccac |
123 |
Q |
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| T |
46554783 |
gtggtctttccttgtcttctgcatacgctatttgggttgaaaaaacgctttctctttacccttccttcaaagaaactattgctattaattataaggccac |
46554684 |
T |
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| Q |
124 |
tctccaatcacatgatttcattaacaaggtaagttg |
159 |
Q |
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| T |
46554683 |
tctccaatcacatgatttcattaacaaggtaagttg |
46554648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 46531480 - 46531574
Alignment:
| Q |
60 |
ttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggccactctccaatcacatgatttcattaacaaggta |
154 |
Q |
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| T |
46531480 |
ttgaaaaatccctttctctttacccttccttcaaagaaattgttgatactaattattttgccactctcagatcacttgatttcataaacaaggta |
46531574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 46469889 - 46469957
Alignment:
| Q |
56 |
tgggttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggccact |
124 |
Q |
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| T |
46469889 |
tgggttgatcaaaccctttctcttcaaccttccttcaaagaaacaatggttactgattataaagccact |
46469957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 46550190 - 46550126
Alignment:
| Q |
60 |
ttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggccact |
124 |
Q |
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| T |
46550190 |
ttgaacaaaccctttctcttcaaccttcctttgaaaaaactatggctactgattataaggccact |
46550126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 9693292 - 9693228
Alignment:
| Q |
56 |
tgggttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggc |
120 |
Q |
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| T |
9693292 |
tgggtagagaaaaccctttctcttcaaccttccttcaaagaaaccatgtctactgattataaggc |
9693228 |
T |
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