View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6182_low_24 (Length: 246)
Name: NF6182_low_24
Description: NF6182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6182_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 48436358 - 48436600
Alignment:
| Q |
1 |
aattgatttctatgacagttgattagtttattacttcatttgttccaaaactatctttattaactatacggtagaatataatgacttgaaagtggtgtat |
100 |
Q |
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| T |
48436358 |
aattgatttctatgacagttgattagtttattacttcatttgttccaaaactatctttattaactatacaatagaatataatgacttgaaagtggtgtat |
48436457 |
T |
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| Q |
101 |
tgtgttgaaataaattttatacgttaaaacgatgatcaatttgcaaccaagggagtgttgaatttcaaactgctagaaatacttacggtgaagaaatcag |
200 |
Q |
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| T |
48436458 |
tgtgttgaaataaattttatacgttcaaacgatgatcaatttgcaaccaagggagtgttgaatttcaaactgctagaaatacttacggtgaagaaatcag |
48436557 |
T |
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| Q |
201 |
tgtcgtgaactaaatagaagaacacaacagtgatgatgtccat |
243 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
48436558 |
tgtcgtgaactaaatagaagaacacaacagtgataatggccat |
48436600 |
T |
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