View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6182_low_26 (Length: 237)
Name: NF6182_low_26
Description: NF6182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6182_low_26 |
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| [»] scaffold0417 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 17126194 - 17125987
Alignment:
| Q |
1 |
attaggatatcttgtatccataggagacgactagaatactttgtattcaaagacgacgattatgatacaattgtatcaagaggcgacaattggtatcaca |
100 |
Q |
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| T |
17126194 |
attaggatatcttgtatccataggtgacgactagaatactttgtattcaacgacgacgattatgatacaattgtatcaagaggcgacgattggtatcaca |
17126095 |
T |
|
| Q |
101 |
ttttctctgtgtgtataaatttagggggagtcaaatccattttcatcaacatgtatttgacatcataaaaaaggggtagattgaagcttgttcttagtat |
200 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17126094 |
ttttctctgtgtgtataaattcagggggagccaaatccattttcatcaacatgtatttgacatcataaaaaagggggagattgaagcttgttcttagtat |
17125995 |
T |
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| Q |
201 |
tagagtag |
208 |
Q |
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|||||||| |
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| T |
17125994 |
tagagtag |
17125987 |
T |
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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 27402407 - 27402321
Alignment:
| Q |
1 |
attaggatatcttgtatccataggagacgactagaatactttgtattcaaa-gacgacgattatgatacaattgtatcaagaggcga |
86 |
Q |
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| T |
27402407 |
attaggatactttgtatccagaggcgacgactagaatactttgtattcaaatgacgacgattatgatacagttgtatcaagaggcga |
27402321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 20147335 - 20147276
Alignment:
| Q |
29 |
gactagaatactttgtattcaa-agacgacgattatgatacaattgtatcaagaggcgac |
87 |
Q |
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| T |
20147335 |
gactagaatactttgtattcaagaggcgacgattttgatacagttgtatcaagaggcgac |
20147276 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 15693218 - 15693294
Alignment:
| Q |
123 |
agggggagtcaaatccattttcatcaacatgtatttgacatcataaaaaaggggtagattgaagcttgttcttagta |
199 |
Q |
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| T |
15693218 |
agggggtgtcatatccatcttcatcaacatgtgtttgatattatcaaaaagggagagattgaagcttgctcttagta |
15693294 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 15856061 - 15856008
Alignment:
| Q |
25 |
agacgactagaatactttgtattcaaa-gacgacgattatgatacaattgtatc |
77 |
Q |
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| T |
15856061 |
agacgactagaataatttgtattcaaatgacgacgactatgatacatttgtatc |
15856008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 12774850 - 12774895
Alignment:
| Q |
32 |
tagaatactttgtattcaaagacgacgattatgatacaattgtatc |
77 |
Q |
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| T |
12774850 |
tagaatactttgtattcaacgacggtgtttatgatacaattgtatc |
12774895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 2335 - 2284
Alignment:
| Q |
29 |
gactagaatactttgtattcaaagacgacgattatgatacaattgtatcaag |
80 |
Q |
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|||||||||||| ||||||||| ||||| |||||||||||| ||| |||||| |
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| T |
2335 |
gactagaatactatgtattcaacgacgatgattatgatacagttgcatcaag |
2284 |
T |
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