View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6182_low_27 (Length: 233)
Name: NF6182_low_27
Description: NF6182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6182_low_27 |
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| [»] scaffold0368 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 38297158 - 38297357
Alignment:
| Q |
17 |
ccaacactcccgaacaaagaagtatgcacaccttgattttatggagagtgaacccaaccaccgtgatctcctcaaaagccacatgtcatgcattacatgt |
116 |
Q |
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| T |
38297158 |
ccaacactcccgaacaaagaagtatgcacaccttgattttgtggagagtgaacccaaccaccgtgatctcctcaaa-gccacatgtcatgcattacatgt |
38297256 |
T |
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| Q |
117 |
acctgttgaccacttctgatcttccacctacatccatttaaaagaatttgacgcgaattctaaatacttctccaaacaaaaataagattgtggcaatgaa |
216 |
Q |
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| T |
38297257 |
acctgttgaccacttctgatcttccacctacatccatttaaaagaatttgacgcgaattccaaatacttctccaaacaaaaataagattgtggccatgaa |
38297356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 38296287 - 38296390
Alignment:
| Q |
39 |
tatgcacaccttgatttta-tggagagtgaacccaaccaccgtgatctcctcaaaagccacatgtcatgcattacatgtacctgttgaccacttctgatc |
137 |
Q |
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| T |
38296287 |
tatgcacaccttgatttttgtggtgagtgaacctaaccaccgtggtctcctcgaa-gccacaggttatgcattacacgtacctgttgaccacttatgatc |
38296385 |
T |
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| Q |
138 |
ttcca |
142 |
Q |
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| T |
38296386 |
ttcca |
38296390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0368 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 1650 - 1753
Alignment:
| Q |
39 |
tatgcacaccttgatttta-tggagagtgaacccaaccaccgtgatctcctcaaaagccacatgtcatgcattacatgtacctgttgaccacttctgatc |
137 |
Q |
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| T |
1650 |
tatgcacaccttgatttttgtggtgagtgaacctaaccaccgtggtctcctcgaa-gccacaggttatgcattacacgtacctgttgaccacttatgatc |
1748 |
T |
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| Q |
138 |
ttcca |
142 |
Q |
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| T |
1749 |
ttcca |
1753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 5608358 - 5608301
Alignment:
| Q |
139 |
tccacctacatccatttaaaagaatttgacgcgaattctaaatacttctccaaacaaa |
196 |
Q |
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| T |
5608358 |
tccacctacatccatgtaaaagtatctgacgcgaattccaaatacttctccaagcaaa |
5608301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 8387113 - 8387061
Alignment:
| Q |
144 |
ctacatccatttaaaagaatttgacgcgaattctaaatacttctccaaacaaa |
196 |
Q |
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| T |
8387113 |
ctacatccatataaaagtaattgacgcgaattccaaatacttctccaagcaaa |
8387061 |
T |
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