View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6182_low_3 (Length: 516)
Name: NF6182_low_3
Description: NF6182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6182_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 455
Target Start/End: Original strand, 32682421 - 32682854
Alignment:
| Q |
19 |
cattatttatataacaaaacaaaaaacaaagctgtaatattcaaatgcttgtgaaccatgtagtccaataaatagcgtaaagaaaaaggaaacggattat |
118 |
Q |
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| T |
32682421 |
cattatttatataacaaaacaaaaaacaaagctgtaatattcaaatgcttgtgaaccatgtagtccaataaatagcgtaaagaaaaaggaaacggattat |
32682520 |
T |
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| Q |
119 |
gtagcattatttttcatttagattacactatttttaaaatttgatgtcttgtagattatatacatacaatcatagaacttcaaataatgaaaaccccttg |
218 |
Q |
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| T |
32682521 |
gtaggattatttttcatttagattacactatttttaaaatttgatgtcttgtagattatataca----atcatagaacttcaaataatgaaaaccccttg |
32682616 |
T |
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| Q |
219 |
aacaaattatcaatttagactttt-gattaaagatgggagccagcaatgacctaactgccccatctttatacacttccattctatatcttgggggaaggg |
317 |
Q |
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| T |
32682617 |
aacaaattatcaatttagactttttgattaaagatgggagccagcaatgacctaactgccccatctttatacacttccattctatatcttgggggaaggg |
32682716 |
T |
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| Q |
318 |
acaacttggatgaatttaccaaaatgaatggccttgtcgggaatatggaaggagtagaacaattcagagcttaccatttcttcattgggagggcccacca |
417 |
Q |
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| T |
32682717 |
acaacttggatgaatttaccaaaatgaatggccttgtcgggaatatggaaggagtagaataattcagagcttaccatttcttcattgggagggggcacca |
32682816 |
T |
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| Q |
418 |
ttcacaaatcaaagtattcattggtaatgtagtcataa |
455 |
Q |
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| T |
32682817 |
ttcacaaatcaaagtattcattggtaatgtagtcataa |
32682854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 516
Target Start/End: Original strand, 32682847 - 32682876
Alignment:
| Q |
487 |
agtcataagtcataacatgcaaagttacaa |
516 |
Q |
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| T |
32682847 |
agtcataagtcataacatgcaaagttacaa |
32682876 |
T |
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