View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6182_low_5 (Length: 463)
Name: NF6182_low_5
Description: NF6182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6182_low_5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 79 - 463
Target Start/End: Complemental strand, 28398949 - 28398565
Alignment:
| Q |
79 |
ttaatttggccaatccaccatggtatcaaatattcatttatatttgatttcatgtggattttgtttgttttagaaataaaatatctccaaaaattc-tta |
177 |
Q |
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| T |
28398949 |
ttaatttggccaatccaccatggtatcaaatattcatttatatttgatttcatgtggattttgtttgttctagaaataaaatatctccaaaaaaaaatta |
28398850 |
T |
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| Q |
178 |
ttttaaagccactgcttttctataaggatgtttgttaagagaatataactgttgtcatcaatcaatttctctcttcattctcatgatatcgagtatcaag |
277 |
Q |
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| T |
28398849 |
ttttaaagccgctgcttttctataaggatatttgttaagagaatataactgttgtcatcaatcaatttctctcttcattctcatgatatctagtttcaag |
28398750 |
T |
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| Q |
278 |
ctccaacttttttatcttgccaacctgcataaatcacaaatgttagcatgaacatgatatttaattttctttgttcagataaatctttttcattgtgtta |
377 |
Q |
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| T |
28398749 |
ctccaacttttttatcttgccaacctgcataaatcacaagtgttagcatgaacatgatatttaattttctttgttcagataaatctttttcattgtgtta |
28398650 |
T |
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| Q |
378 |
gaaataaatcaagacaacaagaccagtagaacacatgtataatttaataaaattaggaattcatgttgatatatgaataaaaatat |
463 |
Q |
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| T |
28398649 |
gaaataaatcaagacaacaaga-cagtagaacacatgtataatttaacaaaattaggaatccatgttgatatatgactaaaaatat |
28398565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 154 - 460
Target Start/End: Complemental strand, 28391048 - 28390744
Alignment:
| Q |
154 |
ataaaatatctccaaaaattcttattttaaagccactgcttttctataaggatgtttgttaagagaatataactgttgtcatcaatcaatttctctcttc |
253 |
Q |
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| T |
28391048 |
ataaaatacctccaaaaattcatatttcaaagccattgctattctataaggatatttgttaagagaatttaactgttgtcatgaagcaatttctctc--c |
28390951 |
T |
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| Q |
254 |
attctcatgatatcgagtatcaagctccaacttttttatcttgccaacctgcataaatcacaaatgttagcatgaacatgatatttaattttctttgttc |
353 |
Q |
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| T |
28390950 |
attcccatgatatctagtttcaagctccaacttttttatcttgccaaaatgcataaatcacaagtgttagcatgaacatgatatttaattttctgggttc |
28390851 |
T |
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| Q |
354 |
agataaatctttttcattgtgttagaaataaatcaagacaacaagaccagtagaacacatgtataatttaataaaattaggaattcatgttgatatatga |
453 |
Q |
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| T |
28390850 |
ggataaatctttttcattgtgttggaaataaatcaagacaacaagaacaatagaacacgtgtatagcttaacaaaattaggaattcatgttgatatatga |
28390751 |
T |
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| Q |
454 |
ataaaaa |
460 |
Q |
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|||||| |
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| T |
28390750 |
ctaaaaa |
28390744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 28399074 - 28399001
Alignment:
| Q |
18 |
atacatatatctaaaagttttagtggttagtattggcaacttataaaaagtcttctagtgattaatttggccaa |
91 |
Q |
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| T |
28399074 |
atacatatatctaaaagttttagtggttagtattggcaacttataaaaagtcttctagtgattaatttggccaa |
28399001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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