View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6182_low_6 (Length: 429)
Name: NF6182_low_6
Description: NF6182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6182_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Original strand, 21396965 - 21397360
Alignment:
| Q |
18 |
gacaccccaaaactagatctcccctaacttggcatttattgtagtagaaaaaattgaaatatgattgatgatgccaaccctcgttattccgtatacaccg |
117 |
Q |
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| T |
21396965 |
gacaccccaaaactagatctcccctaacttggcatttattgtagtagaaaaaattgaaatatgattgatgatgccaaccctcgttattccgtatacaccg |
21397064 |
T |
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| Q |
118 |
tatcattctatccgtatccttaattgttgacccacatgacggacccaccagtctcatccctcatcagacatcaataataatttcacattgtcttacatat |
217 |
Q |
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| T |
21397065 |
tatcattctatccgtatccttaattgttgacccacatgacggacccaccagtctcatccctcatcagacatcaataataatttcacattgtcttacatat |
21397164 |
T |
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| Q |
218 |
caaactgtttatcattgattacgttcaagttttaattcagtcctttaagacaaacgggtaatttaacagtagaagtcaaagaaataaagtaaaattgtcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21397165 |
caaactgtttatcattgattacgttcaagttttaattcagtcctttaaaacaaacgggtaatttaacagtagaagtcaaagaaataaagtaaaattgtcc |
21397264 |
T |
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| Q |
318 |
cttagcagtatgacttctaaataatgtactgtagtgttttatgatcatcaaattctaccaatgtttaattcaatagaaaatacttgttaaatttta |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21397265 |
cttagcagtatgacttctaaataatgtactgtagtgttttatgatcatcaaattctaccaatgtttaattcaatataaaatacttgttaaatttta |
21397360 |
T |
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