View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6182_low_9 (Length: 369)
Name: NF6182_low_9
Description: NF6182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6182_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 25 - 369
Target Start/End: Complemental strand, 32683196 - 32682852
Alignment:
| Q |
25 |
ttatataacacaacttcaaattatgtacgacacaagatcggagttagctgagtgcatgtttttgtgagaggaagttttcatggtcacaaaaccgtggtca |
124 |
Q |
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| T |
32683196 |
ttatataacacaacttcaaattatgtacgacacaagatcggagttagctgagtgcatgtttttgtgagaggaagttttcatggtcacaaaaccgtggtca |
32683097 |
T |
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| Q |
125 |
caagtcttgggaatactaacaaaagtagaattaaaatgtagaattaattttttgattatttttgaaataattataagaataaaacgtataactaatcttt |
224 |
Q |
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| T |
32683096 |
caagtcttgggaatactaacaaaagtagaattaaaatgtagaattaattttttgattatttttgaaataattataagaataaaacgtataactaatcttt |
32682997 |
T |
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| Q |
225 |
tgtgagtatgctatttggcatagatgcgtcctggtttgagaggagatgtacagttgacttttaagttaatcatcagttttgaacttttcatcatatattg |
324 |
Q |
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| T |
32682996 |
tgtgagtatgctatttggcatagatgcgtcctggtttgagaggagatgtacagttgacttttaagttaatcatcagttttgaacttttcatcatatattg |
32682897 |
T |
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| Q |
325 |
gttgactagatatccctaatttgtaactttgcatgttatgactta |
369 |
Q |
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| T |
32682896 |
gttgactagatatccctaatttgtaactttgcatgttatgactta |
32682852 |
T |
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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 21894585 - 21894505
Alignment:
| Q |
157 |
aaaatgtagaattaatttttt-gattatttttgaaataattataagaataaaacgtataactaatcttttgtgagtatgct |
236 |
Q |
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| T |
21894585 |
aaaatgtagaattaatttttttgattatttttgaaataattaaaagaataaaatgtatacttaatagtttgtgagtatgct |
21894505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 45419115 - 45419040
Alignment:
| Q |
157 |
aaaatgtagaattaattttttg-attatttttgaaataattataagaataaaacgtataactaatcttttgtgagt |
231 |
Q |
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| T |
45419115 |
aaaatgtaaaattaattttttttattatttttgaaataattaaaagaataaaaagtagaattaatattttgtgagt |
45419040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 37781027 - 37781086
Alignment:
| Q |
165 |
gaattaattttttgattatttttgaaataattataagaataaaacgtataactaatctttt |
225 |
Q |
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| T |
37781027 |
gaattaatttttt-actatttttaaaataattaaaagaataaaatgtataactaatatttt |
37781086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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