View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6183_low_2 (Length: 304)
Name: NF6183_low_2
Description: NF6183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6183_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 6571755 - 6572027
Alignment:
| Q |
20 |
aagggatgaaactgtattctgaaagaaatcttctggaataggtcctctacccacagccccagttattggctgtgaacttgattctgggcgagtaagagtc |
119 |
Q |
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| T |
6571755 |
aagggatgaaactgtattctgaaagaaatcttctggaataggtcctctacccacagccccagttattggctgtgaacttgattctgggcgagtaagagtc |
6571854 |
T |
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| Q |
120 |
tctgtaccaaacacgtcaccaggagttgaaactgtacgagcagccattcctgttgttacaggaggcagggccaaaaactggccaaaatcttgtggtccac |
219 |
Q |
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| T |
6571855 |
tctgtaccaaacacgtcaccaggagttgaaactgtacgagcagccattcctgttgttacaggaggcagggccaaaaactggccaaaatcttgtggtccac |
6571954 |
T |
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| Q |
220 |
cggttaacgacctgctccttgatggagttaaccctccggtaagtttaaatttactagccgcttctttaatttt |
292 |
Q |
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| T |
6571955 |
tggttaacgacctgctccttgatggagttaaccctccggcaagtttaaatttactagccgcttctttaatttt |
6572027 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 34251025 - 34250941
Alignment:
| Q |
120 |
tctgtaccaaacacgtcaccaggagttgaaactgtacgagcagccattcctgttgttacaggaggcagggccaaaaactggccaa |
204 |
Q |
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| T |
34251025 |
tctgtaccaaaaaggtcaacaggagttgaaacagtagcagtaggaattcctgtagttactggtggcagggacaaaatctggccaa |
34250941 |
T |
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