View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6184_high_10 (Length: 452)
Name: NF6184_high_10
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6184_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 436
Target Start/End: Original strand, 30239401 - 30239821
Alignment:
| Q |
16 |
acagatcataggagtgatggatggtgcttggagttgggaccatagacaaaattggtctttcctactttagtgctaattgttaatgacaaaggaattggac |
115 |
Q |
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| T |
30239401 |
acagatcataggagtgatggatggtgcttggagttgggaccatagacaaaaatggtctttcctactttagtgctaattgttaatgacaaaggaattggac |
30239500 |
T |
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| Q |
116 |
actgacatagcactatatactatattatatatcatgcggtgagtttggtcataggtggtataaaaactcaacccaagtaattggatggtagggttggatt |
215 |
Q |
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| T |
30239501 |
actgacatagcactatatactatattatatatcatgcggtgagtttggtcataggtggtataaaaactcaacccaagtaattggatggtagggttggatt |
30239600 |
T |
|
| Q |
216 |
gattcagtcggtgtcatgaaaagatnnnnnnntaatctgaccgatgaaaatgtttcattttgtttggacttggttnnnnnnntggtcagaatcagagcac |
315 |
Q |
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| T |
30239601 |
gattcagtcggtgtcatgaaaagataaaaaaataatctgaccgatgaaaatgtttcattttgtttggacttggttaaaaaaatggtcagaatcagagcac |
30239700 |
T |
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| Q |
316 |
ttccatgagcactaaaaatcccacaatatggaccatttgagcagaatattaaatgcagtgtagaaataaatggagcttgtgaagagaatgaaccagaaga |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30239701 |
ttccatgagcactaaaaatcccacaatatggaccatttgagcagaatattaaatgcaatgtagaaataaatggagcctgtgaagagaatgaaccagaaga |
30239800 |
T |
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| Q |
416 |
gtagttattattcaaatattg |
436 |
Q |
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| T |
30239801 |
gtagttattattcaaatattg |
30239821 |
T |
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