View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6184_high_11 (Length: 429)

Name: NF6184_high_11
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6184_high_11
NF6184_high_11
[»] chr5 (6 HSPs)
chr5 (55-249)||(12537076-12537266)
chr5 (20-321)||(12546735-12547029)
chr5 (20-88)||(12531590-12531658)
chr5 (35-84)||(9894755-9894804)
chr5 (19-84)||(12538695-12538760)
chr5 (19-83)||(9866624-9866688)
[»] chr4 (1 HSPs)
chr4 (19-78)||(24860643-24860702)
[»] chr8 (4 HSPs)
chr8 (19-79)||(38807093-38807153)
chr8 (20-79)||(43479645-43479704)
chr8 (19-79)||(38799592-38799652)
chr8 (19-79)||(38821865-38821925)
[»] chr2 (1 HSPs)
chr2 (20-83)||(13576446-13576509)
[»] chr7 (2 HSPs)
chr7 (19-80)||(3929931-3929992)
chr7 (34-78)||(21320195-21320239)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 7e-59; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 55 - 249
Target Start/End: Original strand, 12537076 - 12537266
Alignment:
Q  55 cagaatcagaggcgagagggcttagatttggttactgtgcttcttgatctataatataggtgttggttgtatttcttagttagggttatgtttagtttca 154  Q
    ||||||||||||||||||||||||||||||||||| |||||||  ||||     ||||||||||||||||  ||||||||||||| ||||||||||||||    
T  12537076 cagaatcagaggcgagagggcttagatttggttacggtgcttcaagatc-----tataggtgttggttgtggttcttagttagggctatgtttagtttca 12537170  T
Q  155 atgtcaaat-aaaattagggtttggtttatgattttgatgttgtttttatattctgtattgaaggttaacctatggttatcttgtaacaatgctct 249  Q
     |||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| |||| |||||||||| |||||||| ||||||||||||    
T  12537171 ctgtcaaataaaaattagggtttggtttatgattttgatgtagttttaatattctgtaatgaaagttaacctattgttatcttttaacaatgctct 12537266  T

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Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 12547029 - 12546735
Alignment:
Q  20 gttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttggttactgtgcttcttgatctataatataggtgttg 119  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||       || ||||| |   | ||  || ||    
T  12547029 gttactatcatgcctaaggatattcaacttgctcgcagaattagaggcgagagagcttagatttggtta-------tcatgatccaagttctac-tggtg 12546938  T
Q  120 gttgtatttcttagttagggttatgtttagtttcaatgtcaaataaaattagggtttggtttatgattttgatgttgtttttatattc-tgtattgaagg 218  Q
     ||||  |||||||||||  ||| ||||| ||||  |||| || |||| |||||||  | || || || || |||| ||| ||| ||  |||  ||||||    
T  12546937 cttgtggttcttagttagttttaggtttaatttctctgtctaacaaaaatagggttcagattctggttatgttgttttttatatttttatgttgtgaagg 12546838  T
Q  219 ttaacctatggttatcttgtaacaatgctcttttctactgtttcttaattgaattgaatatcattttcctaagatctttgttaataattgtcaattttat 318  Q
    |||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  12546837 ttaacccatggttatcttgtgacaatgctctgttctactgtttcttaattgaattgaatatcattttcctatgttctttgttaataattgtcaattttat 12546738  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 12531590 - 12531658
Alignment:
Q  20 gttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttggtta 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12531590 gttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttggtta 12531658  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 9894755 - 9894804
Alignment:
Q  35 aaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttg 84  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  9894755 aaggatattgaacttgctcgcagaatcagaggcgagagggcttagatttg 9894804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 12538695 - 12538760
Alignment:
Q  19 agttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttg 84  Q
    |||||||||||||||||| | |||||||||| |||||| |||||||||| |||| |||||||||||    
T  12538695 agttactatcatgcctaaaggtattcaactcactcgcataatcagaggcaagagtgcttagatttg 12538760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 9866688 - 9866624
Alignment:
Q  19 agttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagattt 83  Q
    ||||||||| |||||| |||| || |||||||||   |||||||||||| |||||||||||||||    
T  9866688 agttactattatgcctgaggacatccaactcgcttaaagaatcagaggccagagggcttagattt 9866624  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 24860643 - 24860702
Alignment:
Q  19 agttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggctta 78  Q
    |||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24860643 agttaccattatgcccaaggatattcaactcgctcgcagaatcagaggcgagagggctta 24860702  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 38807093 - 38807153
Alignment:
Q  19 agttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttag 79  Q
    ||||||||||||||||||||| |||||||| ||  | ||||||||||||||||||||||||    
T  38807093 agttactatcatgcctaaggacattcaacttgcaagaagaatcagaggcgagagggcttag 38807153  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 43479704 - 43479645
Alignment:
Q  20 gttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttag 79  Q
    ||||| || |||||||||||||||||||| ||  | ||||| ||||||||||||||||||    
T  43479704 gttacaattatgcctaaggatattcaacttgcaagaagaattagaggcgagagggcttag 43479645  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 38799592 - 38799652
Alignment:
Q  19 agttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttag 79  Q
    |||||| |||||||||||||| ||||| || ||  | ||||||||||| ||||||||||||    
T  38799592 agttacaatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttag 38799652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 38821925 - 38821865
Alignment:
Q  19 agttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttag 79  Q
    |||||| |||||||||||||| ||||| || ||  | ||||||||||| ||||||||||||    
T  38821925 agttacaatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttag 38821865  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 13576446 - 13576509
Alignment:
Q  20 gttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagattt 83  Q
    |||||||| |||||||||||||||||||| ||  | |||||||||||||| |||||||||||||    
T  13576446 gttactattatgcctaaggatattcaacttgcgagaagaatcagaggcgaaagggcttagattt 13576509  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 3929992 - 3929931
Alignment:
Q  19 agttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttaga 80  Q
    ||||||||| ||||| |||||||||||||| ||  | |||||||||||||| ||||||||||    
T  3929992 agttactattatgccgaaggatattcaacttgcaagaagaatcagaggcgaaagggcttaga 3929931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 21320195 - 21320239
Alignment:
Q  34 taaggatattcaactcgctcgcagaatcagaggcgagagggctta 78  Q
    ||||||||||||||| ||| ||| ||||||||| |||||||||||    
T  21320195 taaggatattcaacttgcttgcataatcagaggtgagagggctta 21320239  T

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