View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6184_high_16 (Length: 383)
Name: NF6184_high_16
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6184_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 12 - 367
Target Start/End: Complemental strand, 39945190 - 39944836
Alignment:
| Q |
12 |
tcatcaaaaggtataaaagaattggttttcaattgcataaacattcatcaaaatgacaccaagtcatcaaattacatcatttcaaataatcaaaataaca |
111 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39945190 |
tcataaaaaggtataaaagaataggttttcaattgcataaacattcatcaaaatgacaccaaatcatcaaattacatcatttcaaataatcaaaataaca |
39945091 |
T |
|
| Q |
112 |
atagccttaaaactccataaaggtcttcaagtttctgacttttgtctgtgtccactgatggttgagcagatgcatatgacttgtgacttggttgcacctt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39945090 |
atagccttaaaactccataaaggtcttcaagtttctgacttttgtctgtgtccactgatggttgagcagatgcatatg-cttgtgacttggttgcacctt |
39944992 |
T |
|
| Q |
212 |
gcaattgtttgtgatttggagttggttgaagcttgttttttctgtgcagcagatggttgtgaaatggcgttaactggttgcctttgagctgttgtatgta |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39944991 |
acaattgtttgtgatttggagttggttgaagcttgttttttctgtgcagcagatggttgtgaaatggcgttaactggttgcctttgagctgttgtatgta |
39944892 |
T |
|
| Q |
312 |
cagtaggttgtgaattgttttccattgctgtgtctgagatccaacaggtcaacttt |
367 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39944891 |
cagtaggttgtgaattgttttccattgttgtgtctgagatccaacaggtcaacttt |
39944836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 12 - 367
Target Start/End: Complemental strand, 39958203 - 39957849
Alignment:
| Q |
12 |
tcatcaaaaggtataaaagaattggttttcaattgcataaacattcatcaaaatgacaccaagtcatcaaattacatcatttcaaataatcaaaataaca |
111 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39958203 |
tcatcaaaaggtataaaagaataggttttcaattgcataaacgttcatcaaaatgacaccaaatcatcaaattacatcatttcaaataatcaaaataaca |
39958104 |
T |
|
| Q |
112 |
atagccttaaaactccataaaggtcttcaagtttctgacttttgtctgtgtccactgatggttgagcagatgcatatgacttgtgacttggttgcacctt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
39958103 |
atagccttaaaactccataaaggtcttcaagtttctgacttttgtctgtgtccactgatggttgagcagatgcatatg-cttgtgacttggttgcacatt |
39958005 |
T |
|
| Q |
212 |
gcaattgtttgtgatttggagttggttgaagcttgttttttctgtgcagcagatggttgtgaaatggcgttaactggttgcctttgagctgttgtatgta |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39958004 |
gcaattgtttgtgatttggagttggttgaagcttgttttttctgtgcagcagatggttgtgaaatggcgttaactggttgcctttgagctgttgtatgta |
39957905 |
T |
|
| Q |
312 |
cagtaggttgtgaattgttttccattgctgtgtctgagatccaacaggtcaacttt |
367 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39957904 |
cagtaggttgtgaattgttttccattgttgtgtctgagatccaacaggtcaacttt |
39957849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University