View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6184_high_19 (Length: 323)

Name: NF6184_high_19
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6184_high_19
NF6184_high_19
[»] chr5 (2 HSPs)
chr5 (1-312)||(33814557-33814868)
chr5 (9-124)||(33809826-33809942)
[»] scaffold0479 (1 HSPs)
scaffold0479 (1-312)||(657-968)
[»] chr4 (1 HSPs)
chr4 (2-312)||(9754284-9754594)
[»] chr3 (3 HSPs)
chr3 (1-312)||(54969179-54969490)
chr3 (1-282)||(4283995-4284273)
chr3 (254-312)||(13563709-13563767)
[»] chr7 (2 HSPs)
chr7 (1-192)||(4837513-4837704)
chr7 (221-312)||(4837703-4837794)
[»] chr6 (1 HSPs)
chr6 (2-129)||(1130092-1130219)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 33814868 - 33814557
Alignment:
Q  1 gtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctcttcagactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33814868 gtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacttggggtttgggttgttctcttcagactt 33814769  T
Q  101 gagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatctcttcttcc 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33814768 gagtttgaacacccatttatttttcaatgccctctttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatctcttcttcc 33814669  T
Q  201 atggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatattcacctgagaaat 300  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33814668 atggattgtaaccatttttccttattggttgtctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatattcacctgagaagt 33814569  T
Q  301 atcttcttgatg 312  Q
    ||||| ||||||    
T  33814568 atctttttgatg 33814557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 33809942 - 33809826
Alignment:
Q  9 atttcttcaaaatcaatgcctttcttttgatgg-caccccttcacaacaattcgtgctttgtacctggggtttgggttgttctcttcagacttg-agttt 106  Q
    |||| ||||||||||||||||||||||||| || |||||||||||| |||||| |||||||||| ||||| |||||||| || ||| | | ||| |||||    
T  33809942 attttttcaaaatcaatgcctttcttttgaagggcaccccttcacaccaattcatgctttgtacttgggggttgggttg-tccctttaaaattgaagttt 33809844  T
Q  107 gaacacccatttattttt 124  Q
    ||| ||||||||||||||    
T  33809843 gaaaacccatttattttt 33809826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 968 - 657
Alignment:
Q  1 gtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctcttcagactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||    
T  968 gtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacgactattcgtgctttgtatctgggatttgggttgttctcttcagactt 869  T
Q  101 gagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatctcttcttcc 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  868 gagtttgaacacccatttatttttcaatgccctctttccatctggtaattttaccaggtcatacgtttcattctcctttagggattgcatctcttcttcc 769  T
Q  201 atggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatattcacctgagaaat 300  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||||||  ||||| |||||||||||||||||||| |    
T  768 atggattgcaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttcgccttcctttgtgaagtttacatattcacctgagaagt 669  T
Q  301 atcttcttgatg 312  Q
    ||||||||||||    
T  668 atcttcttgatg 657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 2 - 312
Target Start/End: Original strand, 9754284 - 9754594
Alignment:
Q  2 tgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctcttcagacttg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||     
T  9754284 tgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacgactattcgtgctttgtatctgggatttgggttgttctcttcagactta 9754383  T
Q  102 agtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatctcttcttcca 201  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9754384 agtttgaacacccatttatttttcaatgccctctttccatttggcaattttaccaggtcatacgtctcattctcctttagggattgcatctcttcttcca 9754483  T
Q  202 tggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatattcacctgagaaata 301  Q
    |||||| |||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  9754484 tggattacaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttccccttcctcagtgaagtttacatattcacctgagaagta 9754583  T
Q  302 tcttcttgatg 312  Q
    |||||||||||    
T  9754584 tcttcttgatg 9754594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 54969179 - 54969490
Alignment:
Q  1 gtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctcttcagactt 100  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||| || |||||||| ||||| ||||| |||||||||||||||||||||||    
T  54969179 gtgagaatatttcttcaaaatcaacgtctttcttttgatggcaccccttcacgactattcgtgccttgtatctgggatttgggttgttctcttcagactt 54969278  T
Q  101 gagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatctcttcttcc 200  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||    
T  54969279 gagtttaaacacccatttatttttcaatgccctctttccatctggtaatttgaccaggtcatacgtgtcattctcctttagggattgcatctcttcttcc 54969378  T
Q  201 atggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatattcacctgagaaat 300  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |    
T  54969379 atggattgcaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttcgccttcctcggtgaagtttacatattcacctgagaagt 54969478  T
Q  301 atcttcttgatg 312  Q
    ||||||||||||    
T  54969479 atcttcttgatg 54969490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 4283995 - 4284273
Alignment:
Q  1 gtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctcttcagactt 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||  ||||||| ||   ||||||||||||||| ||||||| |||||||| ||||||| |    
T  4283995 gtgagaatttttcttcaaaatcaatgcctttcttttgatggcattccttcacgac---tcgtgctttgtacctagggtttgagttgttctattcagacat 4284091  T
Q  101 gagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatctcttcttcc 200  Q
    ||| |||||||||| |||||||||||||||||| |||||||   |||||||||||| |||||| || |  |||||||||||||||  ||| |||||||      
T  4284092 gagcttgaacacccgtttatttttcaatgccctatttccattcagtaattttaccaagtcatatgtttggttctcctttagggatggcatttcttcttga 4284191  T
Q  201 atggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaattta 282  Q
    ||| |||||| |||||||| |||||||||| ||||||| |||||||||| |||||||||||||| ||| | ||| |||||||    
T  4284192 atgcattgcagccatttttgcttattggttgtctctatggcttccatgatgctttgaggttccctttcattagtaaaattta 4284273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 13563709 - 13563767
Alignment:
Q  254 ttgaggttccccttcctcagtgaaatttacatattcacctgagaaatatcttcttgatg 312  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||    
T  13563709 ttgaggttcgccttccttagtgaagtttacatattcacctgagaagtatcttcttgatg 13563767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 4837513 - 4837704
Alignment:
Q  1 gtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctcttcagactt 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| ||||||||||  |||| |||||||||||||||||||||||    
T  4837513 gtgagaatatttcttcaaaatcaatgcctttctttcgatggcaccccttcacgactatttgtgctttgtatatgggatttgggttgttctcttcagactt 4837612  T
Q  101 gagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatct 192  Q
    ||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  4837613 gagtttgaacacccacttgtttttcaacgccctctttccatctggtaattttaccagatcatacgtctcattctcctttagggattgcatct 4837704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 221 - 312
Target Start/End: Original strand, 4837703 - 4837794
Alignment:
Q  221 cttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatattcacctgagaaatatcttcttgatg 312  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| ||||||    
T  4837703 cttattggttgtctctatggcttccatgaagctttgaggttccccttcctcagtgaagtttacatattcaactgagaagtatctttttgatg 4837794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 1130092 - 1130219
Alignment:
Q  2 tgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctcttcagacttg 101  Q
    |||||||||||||||||||||| ||||||| |||||||||| ||||||  | ||||||||||||||||||| ||||||    ||||||||||||||||||    
T  1130092 tgagaatatttcttcaaaatcattgcctttattttgatggcgccccttagcgacaattcgtgctttgtacccggggttcaacttgttctcttcagacttg 1130191  T
Q  102 agtttgaacacccatttatttttcaatg 129  Q
    |||||||||| ||| |||||||||||||    
T  1130192 agtttgaacatccaattatttttcaatg 1130219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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