View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6184_high_23 (Length: 295)

Name: NF6184_high_23
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6184_high_23
NF6184_high_23
[»] chr7 (16 HSPs)
chr7 (18-282)||(6584622-6584875)
chr7 (130-280)||(42533509-42533663)
chr7 (130-277)||(34389634-34389783)
chr7 (115-280)||(47326141-47326310)
chr7 (37-276)||(16954231-16954474)
chr7 (130-280)||(3419912-3420066)
chr7 (109-280)||(3478003-3478178)
chr7 (142-254)||(9106852-9106964)
chr7 (120-241)||(1320455-1320580)
chr7 (119-206)||(25160477-25160564)
chr7 (130-282)||(8744824-8744980)
chr7 (119-206)||(10243848-10243935)
chr7 (130-276)||(33434779-33434931)
chr7 (114-280)||(37794657-37794826)
chr7 (114-280)||(38305917-38306086)
chr7 (209-244)||(6717024-6717059)
[»] chr2 (14 HSPs)
chr2 (109-280)||(17105062-17105236)
chr2 (119-282)||(41087040-41087208)
chr2 (99-245)||(37770933-37771085)
chr2 (107-244)||(1269128-1269270)
chr2 (44-280)||(7695654-7695893)
chr2 (115-280)||(39339121-39339290)
chr2 (185-254)||(22885412-22885481)
chr2 (186-254)||(15710437-15710505)
chr2 (186-254)||(15722900-15722968)
chr2 (174-236)||(25505196-25505258)
chr2 (180-280)||(10523819-10523922)
chr2 (185-228)||(16952681-16952725)
chr2 (185-228)||(17023346-17023390)
chr2 (185-228)||(17060652-17060696)
[»] chr6 (4 HSPs)
chr6 (114-280)||(16510549-16510718)
chr6 (119-254)||(20702086-20702225)
chr6 (115-254)||(12793776-12793916)
chr6 (114-280)||(15132778-15132947)
[»] chr1 (19 HSPs)
chr1 (109-231)||(52278156-52278279)
chr1 (100-230)||(16147210-16147341)
chr1 (109-244)||(7857301-7857439)
chr1 (135-282)||(30686158-30686308)
chr1 (114-280)||(31586016-31586186)
chr1 (97-254)||(46814750-46814910)
chr1 (120-281)||(10785582-10785748)
chr1 (114-206)||(46693152-46693244)
chr1 (114-253)||(24450214-24450357)
chr1 (115-245)||(27101966-27102089)
chr1 (114-206)||(20113854-20113946)
chr1 (114-206)||(24684809-24684901)
chr1 (114-206)||(41920137-41920228)
chr1 (119-245)||(9313517-9313649)
chr1 (97-254)||(24658566-24658725)
chr1 (141-239)||(19598342-19598440)
chr1 (171-254)||(27032147-27032231)
chr1 (191-254)||(38545017-38545080)
chr1 (141-229)||(17033273-17033361)
[»] chr4 (7 HSPs)
chr4 (109-280)||(19672753-19672927)
chr4 (114-280)||(8254683-8254852)
chr4 (114-280)||(8268101-8268270)
chr4 (130-280)||(31050917-31051070)
chr4 (121-280)||(30964104-30964266)
chr4 (114-276)||(4305381-4305546)
chr4 (195-280)||(22811416-22811504)
[»] chr3 (12 HSPs)
chr3 (109-282)||(37123040-37123218)
chr3 (130-277)||(40023829-40023975)
chr3 (44-280)||(47235301-47235541)
chr3 (114-279)||(25647336-25647507)
chr3 (115-280)||(20611439-20611608)
chr3 (114-206)||(45163504-45163596)
chr3 (162-280)||(14193641-14193763)
chr3 (119-253)||(34476037-34476173)
chr3 (144-244)||(1653176-1653276)
chr3 (114-206)||(19176159-19176251)
chr3 (114-206)||(2394591-2394683)
chr3 (109-154)||(4464323-4464368)
[»] chr5 (7 HSPs)
chr5 (114-254)||(29087204-29087346)
chr5 (109-245)||(26046256-26046395)
chr5 (109-254)||(7195523-7195672)
chr5 (141-254)||(24072546-24072659)
chr5 (44-244)||(13954525-13954728)
chr5 (174-236)||(8730649-8730711)
chr5 (185-236)||(27712819-27712871)
[»] scaffold0063 (1 HSPs)
scaffold0063 (36-244)||(57768-57981)
[»] chr8 (11 HSPs)
chr8 (109-244)||(10248845-10248982)
chr8 (107-245)||(17657297-17657438)
chr8 (114-206)||(34389311-34389403)
chr8 (114-206)||(36630493-36630585)
chr8 (107-254)||(15821663-15821812)
chr8 (114-280)||(37987114-37987284)
chr8 (114-206)||(32066628-32066720)
chr8 (114-242)||(24995690-24995817)
chr8 (141-254)||(30236377-30236490)
chr8 (186-254)||(18690160-18690228)
chr8 (114-203)||(34866375-34866464)
[»] scaffold0119 (1 HSPs)
scaffold0119 (107-244)||(42432-42574)
[»] scaffold0068 (1 HSPs)
scaffold0068 (130-280)||(36028-36181)
[»] scaffold0050 (1 HSPs)
scaffold0050 (97-245)||(36340-36495)
[»] scaffold0062 (3 HSPs)
scaffold0062 (148-230)||(46784-46866)
scaffold0062 (186-254)||(59349-59417)
scaffold0062 (186-254)||(71457-71525)
[»] scaffold1613 (1 HSPs)
scaffold1613 (191-254)||(1296-1359)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 6584622 - 6584875
Alignment:
Q  18 agctttgagtgggggttcggtcgtggttttttggactcggatttggtatctgaacggttgacggatgagagctacatttgggggtggtagatgttattta 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| | |||||||||| ||||||||| | |||||||||    
T  6584622 agctttgagtgggggttcggtcgtggttttttggactcgaatttggtatctgaaaggttggcggacgggagctacatt-gggggtggttggtgttattta 6584720  T
Q  118 ggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt-catttttggg 216  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  6584721 ggtgaggaggcaggtgtttgttggggtgatttcttttggagatagcctctattacacgggtccatgatcgtcgtcgctagctcttgtttgcatttatggg 6584820  T
Q  217 ttgttaaggtgtttagggtgtttggaggatgcgtgtccgttgcgatgagccttttccttttgatct 282  Q
    |||||||         |||||||||||| |||  ||||||||||||||||||||||||||||||||    
T  6584821 ttgttaa---------ggtgtttggagggtgc--gtccgttgcgatgagccttttccttttgatct 6584875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 280
Target Start/End: Complemental strand, 42533663 - 42533509
Alignment:
Q  130 ggtgtttgttgg-ggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttc--atttttgggttgttaaggt 226  Q
    |||||||||| | |||||||||||||||||  ||| | |||||| |||||||||| ||||||||  | ||||||||||   |||||||||||||||||||    
T  42533663 ggtgtttgttagaggtgatttcttttggaggtagcatctgttactcgggtccatgttcgtcgtcattggctcttgtttgtgatttttgggttgttaaggt 42533564  T
Q  227 gtttagggtgtttggaggatgcgtgt-ccgttgcgatgagccttttccttttgat 280  Q
    ||||| |||| |||||||| |||||| ||||||   |||||||||||||||||||    
T  42533563 gtttaaggtggttggaggaagcgtgtcccgttgttctgagccttttccttttgat 42533509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 130 - 277
Target Start/End: Original strand, 34389634 - 34389783
Alignment:
Q  130 ggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttttg---ggttgttaaggt 226  Q
    ||||||||| ||||||||| ||||||||| | | || |||| | ||||||  || |||||||| |||||||| ||||  ||||||   ||||||||||||    
T  34389634 ggtgtttgtgggggtgattccttttggag-ctgactctgttgctcgggtcattgttcgtcgtcactagctctcgttttttttttgttgggttgttaaggt 34389732  T
Q  227 gtttagggtgtttggaggatgcgtgtccgttgcgatgagccttttcctttt 277  Q
    ||||||| |||||||||| ||||||| |||||||||| |||||||||||||    
T  34389733 gtttaggttgtttggagggtgcgtgttcgttgcgatgggccttttcctttt 34389783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 280
Target Start/End: Complemental strand, 47326310 - 47326141
Alignment:
Q  115 ttaggtgaggaggcaggtgtttgttg-gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    |||||||||||||  || | |||||| |||||||||| ||| ||  || ||||||||||||||||||||| |||||||  ||||||||||||  |  |||    
T  47326310 ttaggtgaggaggtgggcggttgttgtgggtgatttcctttagaagcaacctttgttacacgggtccatgttcgtcgttactagctcttgtttgtgcttt 47326211  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    |||||| ||| |||| |||| || ||||||||| |||||||| ||||| | |||||||||||||||||||    
T  47326210 ttgggtggtttaggtatttacggagtttggagggtgcgtgtcacgttgtgttgagccttttccttttgat 47326141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 37 - 276
Target Start/End: Original strand, 16954231 - 16954474
Alignment:
Q  37 gtcgtggtt-ttttggactcggatttggtatctgaacggttgacggatgagagctacatttgggggtggtagatgttatttaggtgaggaggcaggtgtt 135  Q
    ||||||||| ||||||||||||||||||| || | ||||||   |||   |||||  ||| |||| |||| | |||| |||| |||||||||   |||||    
T  16954231 gtcgtggttgttttggactcggatttggtgtcgggacggtttgtggagttgagctttattaggggttggtgggtgttgtttatgtgaggaggagagtgtt 16954330  T
Q  136 tgttgggg-tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt-catttttgggttgttaaggtgtttagg 233  Q
    |||||||| ||||||| | ||||| ||| ||||||||| ||||| | || | |||||| ||| |||| |||| ||||||| | |||||||||||||||||    
T  16954331 tgttgggggtgatttcgtctggaggcagtctttgttactcgggtacttgtttgtcgtcactatctctagtttgcatttttcgattgttaaggtgtttagg 16954430  T
Q  234 gtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttt 276  Q
    || ||||||||  ||| ||| ||||| | |||||||||||||||    
T  16954431 gtttttggaggtagcgggtctcgttgagttgagccttttccttt 16954474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 280
Target Start/End: Complemental strand, 3420066 - 3419912
Alignment:
Q  130 ggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcatttttgggttgttaaggtg 227  Q
    |||| |||||||||||||||  ||||||  || ||| ||||||||||||||||| |||| ||| ||||||||||||  |  ||||||||| ||| |||||    
T  3420066 ggtgcttgttggggtgattttctttggaagcaacctctgttacacgggtccatgttcgttgtcactagctcttgtttgtgctttttgggtggtttaggtg 3419967  T
Q  228 tttagggtgtttggaggatgcgtgtc-cg-ttgcgatgagccttttccttttgat 280  Q
    |||| || ||||||||| |||||||| || ||| | |||||| ||||||||||||    
T  3419966 tttacggagtttggagggtgcgtgtcacgtttgtgttgagccctttccttttgat 3419912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 280
Target Start/End: Original strand, 3478003 - 3478178
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt-tc 207  Q
    |||| ||||||||||| ||  ||||||| ||||||||||||  ||||||| || |||   |||||||||| |||  |||||||| ||||||||||||  |    
T  3478003 tgttgtttaggtgaggtggggggtgttttttggggtgattttatttggaggcatcctcaattacacgggttcatattcgtcgtcactagctcttgttggc 3478102  T
Q  208 atttttgggttgttaagg-tgtttagggtg-tttggaggatgcgtgtcc-gttgcgatgagccttttccttttgat 280  Q
     ||||||||||||||||| | ||| || || |||||||| |||||||||  ||| |||||||||||||||||||||    
T  3478103 gtttttgggttgttaaggtttttttggatgttttggagggtgcgtgtccttttgagatgagccttttccttttgat 3478178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 9106852 - 9106964
Alignment:
Q  142 ggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttgg 241  Q
    ||||||||||||| ||| | |||| |||||  | |||||||  |||||||||||||||||||||| | |||| || ||||||||||||||||||| || |    
T  9106852 ggtgatttcttttagaggccgcctctgttattcaggtccattttcgtcgtcgctagctcttgtttgagttttagggtgttaaggtgtttagggtgctttg 9106951  T
Q  242 aggatgcgtgtcc 254  Q
    ||| || ||||||    
T  9106952 agggtgggtgtcc 9106964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 241
Target Start/End: Original strand, 1320455 - 1320580
Alignment:
Q  120 tgaggaggcaggtgtttgttgggg-tgatttcttttggagacagcctttgttacacgggtccatg-gtcgtcgtcgctagctcttgttt-cattttt--g 214  Q
    |||||||| ||||||||||||||| ||||||||||| ||| |||||| | |||||||||||| ||  |||||||| ||||||||||||| |||||||  |    
T  1320455 tgaggaggaaggtgtttgttgggggtgatttcttttagaggcagcctattttacacgggtccttgtttcgtcgtcactagctcttgtttgcattttttag 1320554  T
Q  215 ggttgttaaggtgtttagggtgtttgg 241  Q
    | ||||| ||||||||| |||||||||    
T  1320555 gattgtt-aggtgtttatggtgtttgg 1320580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 25160477 - 25160564
Alignment:
Q  119 gtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||||||||| ||||||||||||||||||||| ||   |  || ||| ||||||||||||||||| |||||||| |||||||||||||    
T  25160477 gtgaggaggcgggtgtttgttggggtgatttccttaaaaagcaacctatgttacacgggtccatgttcgtcgtcactagctcttgttt 25160564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 282
Target Start/End: Original strand, 8744824 - 8744980
Alignment:
Q  130 ggtgtttgttgggg-tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttca--tttttgggttgttaaggt 226  Q
    |||||||||||||| |||| ||||||||||    |||||||||| ||| ||| || |||||||| ||||| |||||||    ||||| ||||||||||||    
T  8744824 ggtgtttgttgggggtgatctcttttggaggtttcctttgttactcggttccttgttcgtcgtcactagcccttgtttgcgttttttcggttgttaaggt 8744923  T
Q  227 gtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgatct 282  Q
    ||||| | ||||||||||| ||| |||  |||| | |||||||| ||||||||||||    
T  8744924 gtttacgatgtttggaggaagcgagtcttgttgagttgagccttctccttttgatct 8744980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 10243848 - 10243935
Alignment:
Q  119 gtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    ||||| |||| | ||||||||||||||||||| ||| ||  || ||| |||||||||||| |||| |||||||| |||||||||||||    
T  10243848 gtgagaaggccgatgtttgttggggtgatttcctttagaagcaacctctgttacacgggtacatgttcgtcgtcactagctcttgttt 10243935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 276
Target Start/End: Original strand, 33434779 - 33434931
Alignment:
Q  130 ggtgtttgttgggg-tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt----catttttgggttgttaag 224  Q
    |||||||||||||| ||||||| |||| || || ||| |||||| |||||| ||| |||||||| ||||||| |||||    | ||||||||| ||| ||    
T  33434779 ggtgtttgttgggggtgatttcctttgaaggcaacctctgttactcgggtctatgttcgtcgtcactagctcctgttttgtgcttttttgggtggtttag 33434878  T
Q  225 gtgtttagggtgtttggaggatgcgtgt-ccgttgcgatgagccttttccttt 276  Q
    || |||||||||||||||||  ||| || |||||| |  ||||||||||||||    
T  33434879 gtatttagggtgtttggagggagcgggtcccgttgtgtcgagccttttccttt 33434931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 280
Target Start/End: Original strand, 37794657 - 37794826
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    |||| |||||||||  |||| |||||||||||||||| ||| ||  |  ||| ||||| || |||||||| |||||||| ||||||||||||  |  |||    
T  37794657 tttaagtgaggaggtgggtgcttgttggggtgatttcctttagaagcgacctctgttatacaggtccatgttcgtcgtcactagctcttgtttgtgcttt 37794756  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    |||||| ||| ||||||||| || ||||| ||| || ||||| | ||| | ||||| |||||||||||||    
T  37794757 ttgggtggtttaggtgtttacggagtttgaagggtgtgtgtcacattgtgttgagcattttccttttgat 37794826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 280
Target Start/End: Original strand, 38305917 - 38306086
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttg--tttcattt 211  Q
    |||| |||||||||  | || |||||||||||||||| |||  | ||| ||| ||||||||||||||||| || ||||| ||||||||||  | |  |||    
T  38305917 tttaagtgaggaggtggatgcttgttggggtgatttcctttaaatacaacctctgttacacgggtccatgttcatcgtcactagctcttggttgtgcttt 38306016  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtg-tccgttgcgatgagccttttccttttgat 280  Q
    |||||| ||| || |||||| || ||||||||| ||| ||   ||||| | |||||||||||||||||||    
T  38306017 ttgggtggtttagatgtttacggagtttggagggtgcttgcaacgttgtgttgagccttttccttttgat 38306086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 6717059 - 6717024
Alignment:
Q  209 tttttgggttgttaaggtgtttagggtgtttggagg 244  Q
    |||||||||| |||||||||||||||||||||||||    
T  6717059 tttttgggtttttaaggtgtttagggtgtttggagg 6717024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 109 - 280
Target Start/End: Original strand, 17105062 - 17105236
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt-c 207  Q
    |||| |||||||||||||||  |||||||||||||||||||| ||||||| |||||| || ||||| |||||||| |||||||| ||||||||| ||| |    
T  17105062 tgttgtttaggtgaggaggcgtgtgtttgttggggtgatttcctttggaggcagcctctgctacacaggtccatgttcgtcgtcactagctcttatttgc 17105161  T
Q  208 a-tttttgggttgttaaggtgtttagggtgtttggaggatgcgtgt-ccgttgcgatgagccttttccttttgat 280  Q
    | ||||| || |||||||||||||||||||||| |||| ||| ||| |||||| |||||||||||||||||||||    
T  17105162 acttttttggctgttaaggtgtttagggtgtttagagggtgcttgtcccgttgtgatgagccttttccttttgat 17105236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 282
Target Start/End: Complemental strand, 41087208 - 41087040
Alignment:
Q  119 gtgaggaggcaggtgtttgttgggg-tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgt-ttcattttt--g 214  Q
    |||||||||| |||||||||||||| ||||||||||||||| |||||| |||||| ||||||| |  |||||||  ||||||||||| | | |||||  |    
T  41087208 gtgaggaggcgggtgtttgttgggggtgatttcttttggagtcagcctctgttactcgggtccttattcgtcgttactagctcttgtatgcgttttttgg 41087109  T
Q  215 ggttgttaaggtgtttagggtgtttggaggatgcgtgt-ccgttgcgatgagccttttccttttgatct 282  Q
    |||||||||||||| |||||||||||||||  ||| || |||||| | | ||||||||||| |||||||    
T  41087108 ggttgttaaggtgtctagggtgtttggaggtagcgggtcccgttgagctaagccttttcctattgatct 41087040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 37771085 - 37770933
Alignment:
Q  99 gggtggtagatgttatttaggtgaggaggcaggtgtttgttg-gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctag 197  Q
    ||||||| | |||| ||||||||||||||| ||||||||||| ||||||||||| |||||| | |||| | | || ||||||| || |||||||| ||||    
T  37771085 gggtggttggtgttgtttaggtgaggaggcgggtgtttgttgagggtgatttctgttggaggctgcctctataactcgggtccttgttcgtcgtcactag 37770986  T
Q  198 ctcttgttt-cattttt---gggttgttaaggtg-tttagggtgtttggagga 245  Q
    || |||||| | |||||   |||||||||||||| ||||||||||||||||||    
T  37770985 cttttgtttgcgtttttttggggttgttaaggtgttttagggtgtttggagga 37770933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 1269128 - 1269270
Alignment:
Q  107 gatgttat-ttaggtgaggaggcaggtgtttgtt-ggggtgatttcttttggagacagcctttgttacacgggtccatg-gtcgtcgtcgctagctcttg 203  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||||| |||||   |||| | |||| ||||||| ||  |||||||| ||||||||||    
T  1269128 gatgttatgttaggtgaggaggcgggtgtttgttgggggtgatttcttctggaggttgcctctattactcgggtccttgtttcgtcgtcactagctcttg 1269227  T
Q  204 ttt-cattttt-gggttgttaaggtgtttagggtgtttggagg 244  Q
    ||| | ||||| |||||||||| ||||||| ||||||||||||    
T  1269228 tttgcgtttttggggttgttaaagtgtttatggtgtttggagg 1269270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 280
Target Start/End: Original strand, 7695654 - 7695893
Alignment:
Q  44 ttttttggactcggatttggtatctgaacggttgacggatgagagctacatttgggggtggtagatgttatttaggtgaggaggcaggtgtttgttgggg 143  Q
    ||||||||||||| ||||||| |  ||||| || ||||| |||| ||  ||  ||| ||||| | |||| ||||||||| |||||  ||||||||||| |    
T  7695654 ttttttggactcgaatttggtgttggaacgatttacggacgagaactttataagggtgtggttggtgttgtttaggtgaagaggcgagtgtttgttggag 7695753  T
Q  144 t-gatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttt-tgggttgttaaggtgtttagggtgtttgg 241  Q
    | ||||| |||| ||| | |||| |||||| ||||||| || |||  ||| ||||||||| || | |||| ||||||||||||||||||||| ||||| |    
T  7695754 ttgatttattttagaggctgcctctgttactcgggtccttgttcgctgtccctagctctttttgcgttttttgggttgttaaggtgtttaggctgtttag 7695853  T
Q  242 aggatgcg-tgtccgttgcgatgagccttttccttttgat 280  Q
    | || |||   ||| ||| | |||||||||||||||||||    
T  7695854 aagaagcgaattcctttgtgttgagccttttccttttgat 7695893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 280
Target Start/End: Complemental strand, 39339290 - 39339121
Alignment:
Q  115 ttaggtgaggaggcaggtgtttgttg-gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    ||||||||||| | ||||| |||||| |||||||||  ||| ||  || ||  ||||||||||||||||| |||||||  ||||||||||||  |  |||    
T  39339290 ttaggtgaggatgtaggtggttgttgtgggtgattttctttagaagcaacccctgttacacgggtccatgttcgtcgttactagctcttgtttgtgcttt 39339191  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    |||||| ||| ||||||||| |  ||||||||| || ||||| ||||| | |||||||||||||||||||    
T  39339190 ttgggtggtttaggtgtttacgaagtttggagggtgtgtgtcacgttgtgttgagccttttccttttgat 39339121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 22885481 - 22885412
Alignment:
Q  185 tcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    |||||||||||| ||||||||| | ||| |||||| ||||||||||| |||| ||||||| |||||||||    
T  22885481 tcgtcgtcgctacctcttgtttgagtttcgggttgctaaggtgtttaaggtgattggagggtgcgtgtcc 22885412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 15710437 - 15710505
Alignment:
Q  186 cgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    ||||||||||||||||||||| | | |||| |||||||||||||| |||||  | ||| ||||||||||    
T  15710437 cgtcgtcgctagctcttgtttgagtattggattgttaaggtgttttgggtgccttgagcatgcgtgtcc 15710505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 15722900 - 15722968
Alignment:
Q  186 cgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    ||||||||||||||||||||| | | |||| |||||||||||||| ||||| || |||  |||||||||    
T  15722900 cgtcgtcgctagctcttgtttgagtattggattgttaaggtgttttgggtgctttgagcgtgcgtgtcc 15722968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 25505258 - 25505196
Alignment:
Q  174 cgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtg 236  Q
    |||||||||  |||| | ||||| ||||||||| | ||||| |||||||||||||||||||||    
T  25505258 cgggtccattttcgttgacgctacctcttgtttgagttttgagttgttaaggtgtttagggtg 25505196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 280
Target Start/End: Original strand, 10523819 - 10523922
Alignment:
Q  180 catggtcgtcgtcgctagctcttgtt--tcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttt 276  Q
    |||| |||||||| ||||||||||||  |  |||| |||| ||| ||||||||| || ||||| ||| |||||||| ||||| | ||||||||||| |||    
T  10523819 catgttcgtcgtcactagctcttgtttgtgcttttcgggtggtttaggtgtttacggagtttgtagggtgcgtgtcacgttgtgttgagccttttctttt 10523918  T
Q  277 tgat 280  Q
    ||||    
T  10523919 tgat 10523922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 16952725 - 16952681
Alignment:
Q  185 tcgtcgtcgctagctcttgttt-catttttgggttgttaaggtgt 228  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||    
T  16952725 tcgtcgtcactagctcttatttgcatttttgggttgttaaggtgt 16952681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 17023390 - 17023346
Alignment:
Q  185 tcgtcgtcgctagctcttgttt-catttttgggttgttaaggtgt 228  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||    
T  17023390 tcgtcgtcactagctcttatttgcatttttgggttgttaaggtgt 17023346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 17060696 - 17060652
Alignment:
Q  185 tcgtcgtcgctagctcttgttt-catttttgggttgttaaggtgt 228  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||    
T  17060696 tcgtcgtcactagctcttatttgcatttttgggttgttaaggtgt 17060652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 114 - 280
Target Start/End: Complemental strand, 16510718 - 16510549
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttc--attt 211  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||  | ||| | ||||||||||||||| |||||||| ||||||||||||||   |||    
T  16510718 tttaagtgaggaggcgggtgtttgttggggtgatttcctttggaggaaacctctcttacacgggtccatgttcgtcgtcactagctcttgtttctgcttt 16510619  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtg-tccgttgcgatgagccttttccttttgat 280  Q
    | |||| ||| ||||||||| || ||||||||| |||||| ||||||| | |||||||||||||||||||    
T  16510618 tcgggtggtttaggtgtttatggagtttggagggtgcgtgttccgttgtgttgagccttttccttttgat 16510549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 254
Target Start/End: Complemental strand, 20702225 - 20702086
Alignment:
Q  119 gtgaggaggcaggtgtttgttgggg-tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgt-ttcattttt--g 214  Q
    |||||||||| |||||||||||||| |||||||||||||||  |||||||||||| ||||||| || |||||||| |||| |||||| | |||||||  |    
T  20702225 gtgaggaggcgggtgtttgttgggggtgatttcttttggaggtagcctttgttactcgggtccttgttcgtcgtcactagttcttgtatgcattttttgg 20702126  T
Q  215 ggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    | ||||||||||||||||||||||||||||| ||| ||||    
T  20702125 gattgttaaggtgtttagggtgtttggaggaagcgggtcc 20702086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 254
Target Start/End: Original strand, 12793776 - 12793916
Alignment:
Q  115 ttaggtgaggaggcaggtgtttgttg-gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcattttt 213  Q
    ||||||||||||   |||| |||||| ||||||||||| ||||||   ||||||||||  |||||||||  |||| ||| ||||||||||||| | || |    
T  12793776 ttaggtgaggagaggggtgattgttgtgggtgatttctattggaggtcgcctttgttattcgggtccatactcgttgtccctagctcttgtttaagttgt 12793875  T
Q  214 gggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    ||||||||||||||||| |||||||| |||| || ||||||    
T  12793876 gggttgttaaggtgttttgggtgttttgagggtgtgtgtcc 12793916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 280
Target Start/End: Complemental strand, 15132947 - 15132778
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt-tcatttt 212  Q
    |||||||||| |||  |||||||||||||| |||||  ||| |||||||||| |   |||||| |||| | |||||||| |||| |||| ||   |||||    
T  15132947 tttaggtgagcaggtgggtgtttgttggggagattttctttagagacagcctctagcacacggatccacgttcgtcgtcactagttcttattggtatttt 15132848  T
Q  213 tgggttg-ttaaggtgtttagggtg-tttggaggatgcgtgtccgttgcgatgagccttttccttttgat 280  Q
    ||||||| ||||||||||||  | | |||||||| |||||| | |||| ||||||||| |||||||||||    
T  15132847 tgggttgtttaaggtgtttacagagttttggagggtgcgtgcctgttgagatgagcctcttccttttgat 15132778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 109 - 231
Target Start/End: Original strand, 52278156 - 52278279
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt-tc 207  Q
    |||| ||||||||||||||||||||||||||||||||||||  |||||||  |||||||||| |||||||||||| |||||||  ||||||||||||  |    
T  52278156 tgttgtttaggtgaggaggcaggtgtttgttggggtgattttctttggaggaagcctttgtttcacgggtccatgttcgtcgttactagctcttgttggc 52278255  T
Q  208 atttttgggttgttaaggtgttta 231  Q
     |||||||||||||||||||||||    
T  52278256 gtttttgggttgttaaggtgttta 52278279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 100 - 230
Target Start/End: Original strand, 16147210 - 16147341
Alignment:
Q  100 ggtggtagatgttatttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagct 199  Q
    |||||| | |||| ||||||||||||||  ||||||  ||||||||||||| ||||||| |||||| ||||||||||| ||||| |||||||| ||||||    
T  16147210 ggtggttggtgttgtttaggtgaggaggtgggtgttgcttggggtgatttcctttggaggcagcctctgttacacgggcccatgttcgtcgtcactagct 16147309  T
Q  200 cttgttt-catttttgggttgttaaggtgttt 230  Q
    ||| ||| | ||||||||||||||||||||||    
T  16147310 cttatttgcgtttttgggttgttaaggtgttt 16147341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 244
Target Start/End: Original strand, 7857301 - 7857439
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttggggtgatttctttt-ggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt- 206  Q
    |||| |||||||||||||| |||| ||||||||||||| | ||||| |||| | | || |||||| |||||||||| |||||||| |||||||||||||     
T  7857301 tgttttttaggtgaggaggaaggtatttgttggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttg 7857400  T
Q  207 cat-ttttgggttgttaaggtgtttagggtgtttggagg 244  Q
    | | ||| ||||||| |||||||||||||||||||||||    
T  7857401 cgtctttggggttgtcaaggtgtttagggtgtttggagg 7857439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 135 - 282
Target Start/End: Complemental strand, 30686308 - 30686158
Alignment:
Q  135 ttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcatttttgggttgttaaggtgtttag 232  Q
    |||||||||||||||| ||| ||  |||| | ||||||||| ||||||| |||| ||| ||||||||||||  |  ||||||||| ||| |||||||||     
T  30686308 ttgttggggtgatttcctttagaagcagcatctgttacacgagtccatgttcgttgtcactagctcttgtttgtgctttttgggtggtttaggtgtttac 30686209  T
Q  233 ggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgatct 282  Q
    || ||||||||| | |||||| ||||| | |||||||||||||||||||||    
T  30686208 ggagtttggagggttcgtgtcacgttgtgttgagccttttccttttgatct 30686158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 114 - 280
Target Start/End: Complemental strand, 31586186 - 31586016
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt---tcatt 210  Q
    |||| |||||||||  |||| |||||||||||||||| ||| ||   | ||| ||||||||||||||||| |||||||| || |||||||||   |  ||    
T  31586186 tttaagtgaggaggtgggtgcttgttggggtgatttcctttagaagaaacctctgttacacgggtccatgttcgtcgtcactggctcttgttttgtgctt 31586087  T
Q  211 tttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    ||||||| ||| |||||||||  | ||||||||| |||||||| ||||  | |||||||||||||||||||    
T  31586086 tttgggtggtttaggtgtttacagagtttggagggtgcgtgtcacgttatgttgagccttttccttttgat 31586016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 254
Target Start/End: Complemental strand, 46814910 - 46814750
Alignment:
Q  97 gggggtggtagatgttatttaggtgaggaggcaggtgtttgttggggtgattt--cttttggagacagcctttgttacacgggtccatggtcgtcgtcgc 194  Q
    |||||||| ||| ||| |||||||||||| | ||||| |||||||  |  |||  | |||||||||| ||| | || |||||||||||| | |||||| |    
T  46814910 gggggtggcagacgttgtttaggtgaggaagtaggtgcttgttggtttttttttccctttggagacaacctctatttcacgggtccatgtttgtcgtcac 46814811  T
Q  195 tagctcttgttt-catttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    | |||||||||  |  |||||||||||| |||||||||||||||||||||| |||||||||    
T  46814810 ttgctcttgttggcgcttttgggttgtttaggtgtttagggtgtttggagggtgcgtgtcc 46814750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 281
Target Start/End: Complemental strand, 10785748 - 10785582
Alignment:
Q  120 tgaggaggcaggtgtttgttgggg-tgatttcttttggagacagcctttgttacacgggtccatggt--cgtcgtcgctagctcttgttt-catttttgg 215  Q
    |||||||||| |||||| |||||| ||||||||||||||| | |||| ||||||  |||||  ||||  ||||||| ||| | ||||||| |||||||||    
T  10785748 tgaggaggcaagtgtttattgggggtgatttcttttggaggctgcctctgttacttgggtct-tggtttcgtcgtcactaacccttgtttgcatttttgg 10785650  T
Q  216 g-ttgttaaggtgtttagggtgtttggaggatgcgtgt-ccgttgcgatgagccttttccttttgatc 281  Q
    | ||||||||||||||||||||||||||||  ||  || || ||| | ||||||||||||||||||||    
T  10785649 ggttgttaaggtgtttagggtgtttggagggagcaggtcccattgagctgagccttttccttttgatc 10785582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 46693244 - 46693152
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| |||||||||  ||||||||||||||||||||| ||| ||  || ||| |||||||||||| |||| |||||||| |||||||||||||    
T  46693244 tttaagtgaggaggtgggtgtttgttggggtgatttcctttagaagcaacctctgttacacgggtacatgttcgtcgtcactagctcttgttt 46693152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 253
Target Start/End: Complemental strand, 24450357 - 24450214
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt----cat 209  Q
    |||| ||||||||||  ||| |||||||||||||||| ||| ||  || ||||||||| | ||||||||| |||||||| |||||||||||||      |    
T  24450357 tttaagtgaggaggcgtgtgcttgttggggtgatttcctttagaagcaacctttgttaaatgggtccatgttcgtcgtctctagctcttgtttgtgcttt 24450258  T
Q  210 ttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc 253  Q
    |||||||| ||| ||||||||| || |||||| || ||||||||    
T  24450257 ttttgggtggtttaggtgtttacggagtttggggggtgcgtgtc 24450214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 245
Target Start/End: Original strand, 27101966 - 27102089
Alignment:
Q  115 ttaggtgaggaggcaggtgtttgttg-gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcattttt 213  Q
    |||||||||||||| ||||| ||||| ||||  |||||||||||| | |||| |||||| ||||||| |  |||||||| | |||||||||||           
T  27101966 ttaggtgaggaggcgggtgtctgttgagggtattttcttttggaggcggcctctgttactcgggtccttcttcgtcgtcacgagctcttgttt------- 27102058  T
Q  214 gggttgttaaggtgtttagggtgtttggagga 245  Q
     |||||||||||||||||||||||||||||||    
T  27102059 -ggttgttaaggtgtttagggtgtttggagga 27102089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 20113946 - 20113854
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| ||||||||||  ||| |||||||||||||||| ||| ||  || ||| |||||||||||| |||| |||||||| |||||||||||||    
T  20113946 tttaagtgaggaggcgagtgcttgttggggtgatttcctttagaagcaacctatgttacacgggttcatgttcgtcgtctctagctcttgttt 20113854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 24684901 - 24684809
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| |||||||||| |||| ||||||||||||| || ||||||  || ||| ||||||| |||||| || || ||||| |||||||||||||    
T  24684901 tttatgtgaggaggcgggtggttgttggggtgatgtcctttggaagcaacctatgttacatgggtccttgttcatcgtcactagctcttgttt 24684809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 41920137 - 41920228
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| ||||||| ||||||| |||||||| ||||||| ||| ||  || ||| | ||||||||||||||| |||||||| |||||||||||||    
T  41920137 tttaagtgaggatgcaggtgcttgttggg-tgatttcctttagaagcaacctctattacacgggtccatgttcgtcgtcactagctcttgttt 41920228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 245
Target Start/End: Complemental strand, 9313649 - 9313517
Alignment:
Q  119 gtgaggaggcaggtgtttgttgggg-tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgt-ttcattttt--- 213  Q
    |||||||||  || ||||||||||| |||||||||||| || |||||||||||||  |||||| || | ||||||  |||||||||| | | |||||       
T  9313649 gtgaggaggagggcgtttgttgggggtgatttcttttgaaggcagcctttgttacttgggtccttgtttgtcgtcaatagctcttgtatgcgtttttttg 9313550  T
Q  214 -gggttgttaaggtgtttagggtgtttggagga 245  Q
     |||||| ||||||||||| |||||||||||||    
T  9313549 ggggttgctaaggtgtttatggtgtttggagga 9313517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 254
Target Start/End: Original strand, 24658566 - 24658725
Alignment:
Q  97 gggggtggtagatgttatttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggt-cgtcgtcgct 195  Q
    |||||||| || |||  |||||||||||||   | || ||||||||||| |||| ||||||| || ||| |||| ||  |||||||| | ||||||| ||    
T  24658566 gggggtggcaggtgtcgtttaggtgaggagatggatgcttgttggggtgttttcctttggagccaacctctgtttcataggtccatgattcgtcgtcact 24658665  T
Q  196 agctcttgttt-catttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
     |||||||||  |  |||||||||||| || ||||||||||||||||||| || ||||||    
T  24658666 tgctcttgttggcgcttttgggttgtttagatgtttagggtgtttggagggtgtgtgtcc 24658725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 19598342 - 19598440
Alignment:
Q  141 gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgttt 239  Q
    |||||||| ||||||||||| |||| |||||  | |||||||  |||| |||||||  ||| |||| | |||||||| | |||||||||||||||||||    
T  19598342 gggtgattccttttggagaccgcctctgttattcaggtccatattcgttgtcgctacatctagtttgagttttgggtggctaaggtgtttagggtgttt 19598440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 27032231 - 27032147
Alignment:
Q  171 acacgggtccatggtcgtcgtcgctagctcttgtt-tcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    |||||||||  || |||||||| || ||||||||| ||  |||||||||||| |||||| ||||||||||||||| || ||||||    
T  27032231 acacgggtctttgttcgtcgtcacttgctcttgttatcgcttttgggttgtttaggtgtgtagggtgtttggagggtgtgtgtcc 27032147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 38545080 - 38545017
Alignment:
Q  191 tcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    |||||||||||||||| | |||||||| |||||| ||||||||||| || |||| || ||||||    
T  38545080 tcgctagctcttgtttgagttttgggtcgttaagatgtttagggtgctttgagggtgtgtgtcc 38545017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 17033273 - 17033361
Alignment:
Q  141 gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtt 229  Q
    |||||||||||||||||| | |||| |||||   ||||||||  ||||||||| | ||| |||||| | ||||||||| || |||||||    
T  17033273 gggtgatttcttttggaggcggcctatgttatttgggtccattttcgtcgtcgttggctattgtttgagttttgggttattgaggtgtt 17033361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 109 - 280
Target Start/End: Original strand, 19672753 - 19672927
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt-tc 207  Q
    |||| ||||||||||||||| |||||||||| |||||||||| ||||||| || |||  ||||||||| |||||| |||||| | ||||||||||||       
T  19672753 tgttgtttaggtgaggaggcgggtgtttgtttgggtgatttcctttggaggcatcctccgttacacggatccatgttcgtcgccactagctcttgttggt 19672852  T
Q  208 atttttgggttgttaaggtgtttaggg-tgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
     ||||||||||||||||||||||||||   ||||| || |||||||| ||||| |||||||||||||||||||||    
T  19672853 gtttttgggttgttaaggtgtttagggaattttggggggtgcgtgtctcgttgagatgagccttttccttttgat 19672927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 280
Target Start/End: Original strand, 8254683 - 8254852
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    |||| |||||||||| |||| ||||||||| |||||  ||||||  || ||||||||||||||||||||| |||||||| ||||||||||||  | |||     
T  8254683 tttaagtgaggaggcgggtgcttgttggggagattttctttggaagcaacctttgttacacgggtccatgttcgtcgtcactagctcttgtttgtgattg 8254782  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    |||||| ||| |||||||||  | ||||| ||| |||||||| | ||| | |||||||||||||||||||    
T  8254783 ttgggtggtttaggtgtttaccgagtttgaagggtgcgtgtcgctttgtgttgagccttttccttttgat 8254852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 280
Target Start/End: Original strand, 8268101 - 8268270
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    |||| |||||||||| |||| ||||||||| |||||  ||||||  || ||||||||||||||||||||| |||||||| ||||||||||||  | |||     
T  8268101 tttaagtgaggaggcgggtgcttgttggggagattttctttggaagcaacctttgttacacgggtccatgttcgtcgtcactagctcttgtttgtgattg 8268200  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    |||||| ||| |||||||||  | ||||| ||| |||||||| | ||| | |||||||||||||||||||    
T  8268201 ttgggtggtttaggtgtttaccgagtttgaagggtgcgtgtcgctttgtgttgagccttttccttttgat 8268270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 280
Target Start/End: Complemental strand, 31051070 - 31050917
Alignment:
Q  130 ggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcatttttgggttg-ttaaggt 226  Q
    |||||||||| ||||| |||| ||||||| |||||| || |||||||||||| | |||||||| ||||||||||||  || ||||||||||| |||||||    
T  31051070 ggtgtttgtttgggtgttttcctttggaggcagcctctggtacacgggtccacgttcgtcgtcactagctcttgttggtc-tttttgggttgtttaaggt 31050972  T
Q  227 gtttagggtg-tttggaggatgcgtgtccgttgcgatgagccttttccttttgat 280  Q
    |||||||| | |||||||| |||||  |||||| |||||| || |||||||||||    
T  31050971 gtttagggagttttggagggtgcgttcccgttgtgatgagtctcttccttttgat 31050917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 280
Target Start/End: Original strand, 30964104 - 30964266
Alignment:
Q  121 gaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcatttttgggtt 218  Q
    |||||||  |||| ||||||||||||| || |||  |  || ||| ||||||||||||||||| |||||||| |||||| |||||  |  |||||||||     
T  30964104 gaggaggtgggtgcttgttggggtgatatcctttaaaagcaacctctgttacacgggtccatgttcgtcgtcactagctattgtttgtgctttttgggtg 30964203  T
Q  219 gttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    ||| ||||||||  || ||||||||| |||||||| ||||| | ||| |||||||||||||||    
T  30964204 gtttaggtgtttgcggagtttggagggtgcgtgtcacgttgtgttgaaccttttccttttgat 30964266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 276
Target Start/End: Original strand, 4305381 - 4305546
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    |||| |||||||||  |||| |||||||||||||||| ||| ||  ||   | ||||||| || |||||| |||||||| ||||||||||||  |  |||    
T  4305381 tttaagtgaggaggtgggtgcttgttggggtgatttcctttagaagcaatatctgttacatggatccatgttcgtcgtcactagctcttgtttgtgcttt 4305480  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttt 276  Q
    ||||||||||  |||||||  |||||||||| | | |||||| ||||| | |||||||||||||||    
T  4305481 ttgggttgtttgggtgttttcggtgtttggaaggttcgtgtcacgttgtgttgagccttttccttt 4305546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 280
Target Start/End: Complemental strand, 22811504 - 22811416
Alignment:
Q  195 tagctcttgttt-catttttg-ggttgttaaggtgtttagggtgtttggaggatgcgtgt-ccgttgcgatgagccttttccttttgat 280  Q
    |||||||||||| | |||||| |||||||||||||||||||| |||||||||| ||| || ||||||   | |||||||||||||||||    
T  22811504 tagctcttgtttgcttttttgtggttgttaaggtgtttagggagtttggaggaagcgggtcccgttgatctaagccttttccttttgat 22811416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 109 - 282
Target Start/End: Original strand, 37123040 - 37123218
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttg-gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt- 206  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||| |||| | |||| || ||| ||||||| || |||||||| |||||||||||||     
T  37123040 tgttgtttaggtgaggaggcaggtgtttgttgagggtgatttctttcggaggcggcctctggtactcgggtccttgttcgtcgtcactagctcttgtttg 37123139  T
Q  207 --catttttgggttgttaaggtgtttagggtgtttggaggatgcgtg-tccgttgcgatgagccttttccttttgatct 282  Q
        |||| |||||||||||| ||||||||||||||||||| ||| | ||| ||| | |||| ||||||||||||||||    
T  37123140 tgttttttggggttgttaaggagtttagggtgtttggaggaagcgggttccattgagttgagtcttttccttttgatct 37123218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 277
Target Start/End: Complemental strand, 40023975 - 40023829
Alignment:
Q  130 ggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtt 229  Q
    ||||||||| ||||||||| ||||||||| | | || |||| | ||||||| || ||||| || |||||||| ||||  || ||||||||||||||||||    
T  40023975 ggtgtttgtgggggtgattccttttggag-ctgactctgttgctcgggtccttgttcgtcctcactagctctcgtttttttgttgggttgttaaggtgtt 40023877  T
Q  230 tagggtgtttggaggatgcgtgtccgttgcgatgagccttttcctttt 277  Q
    || |||||||||||| ||||||||||||| ||||||||||||||||||    
T  40023876 taaggtgtttggagggtgcgtgtccgttgtgatgagccttttcctttt 40023829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 44 - 280
Target Start/End: Original strand, 47235301 - 47235541
Alignment:
Q  44 ttttttggactcggatttggtatctgaacggttgacggatgagagctacatttgggggtggtagatgttatttaggtgaggaggcaggtgtttgttgggg 143  Q
    ||||||||||| ||||||||| ||  |||||||  |||| | |||| | | | | ||||||  | |||| |||| |||||||||  |||||| |||||||    
T  47235301 ttttttggacttggatttggtgtcaaaacggtttgcggacgggagcaataatagagggtggctggtgttgtttaagtgaggaggtgggtgttggttgggg 47235400  T
Q  144 tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt---catttttgggttgttaaggtgtttagggtgtttg 240  Q
    ||||||| ||| ||  || ||||||||||||||||||||| || ||||| |||||||||||||     ||||||||| ||| ||||||||| || |||||    
T  47235401 tgatttcctttagaagcaacctttgttacacgggtccatgttcatcgtctctagctcttgtttgtgtttttttgggtggtttaggtgtttacggagtttg 47235500  T
Q  241 gaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    |||| |||||||| ||||| | |||||||||||||||||||    
T  47235501 gagggtgcgtgtcacgttgtgttgagccttttccttttgat 47235541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 114 - 279
Target Start/End: Original strand, 25647336 - 25647507
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggg--gtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcat 209  Q
    ||||||||||||||| |||||||  ||||  ||||||  ||| ||||   ||||||||||| ||||||| || |||||||| ||||||||||||  | ||    
T  25647336 tttaggtgaggaggcgggtgttttgtgggtggtgattcatttgggaggttgcctttgttactcgggtccttgttcgtcgtcactagctcttgttcgtgat 25647435  T
Q  210 ttttg-ggttgttaaggtgtttagggtgtttggaggatgcgtgt-ccgttgcgatgagccttttccttttga 279  Q
    ||||  ||||||||||||||||||||||||||||||| ||| || |||||| | || |||||||||||||||    
T  25647436 ttttaaggttgttaaggtgtttagggtgtttggaggaagcgagtcccgttgagttgtgccttttccttttga 25647507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 115 - 280
Target Start/End: Original strand, 20611439 - 20611608
Alignment:
Q  115 ttaggtgaggaggcaggtgtttgttg-gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    ||||||||||| | ||||| |||||  |||||||||| ||| ||  || ||| ||||||||||||||||| | |||||  ||||||||||||  |  |||    
T  20611439 ttaggtgaggatgtaggtggttgttatgggtgatttcctttagaagcaacctctgttacacgggtccatgtttgtcgttactagctcttgtttgtgcttt 20611538  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    |||||| ||| ||||||||| |  ||||||||| |||||||| ||||| | |||||||||||||||||||    
T  20611539 ttgggtagtttaggtgtttacgaagtttggagggtgcgtgtcacgttgtgttgagccttttccttttgat 20611608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 45163504 - 45163596
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| |||||||||| ||||| ||||||||||||||| ||| ||  ||  |||||||||||||||||||| |||||||| ||| |||||||||    
T  45163504 tttaagtgaggaggcgggtgtatgttggggtgatttcctttagaagcaatctttgttacacgggtccatgttcgtcgtctctaactcttgttt 45163596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 280
Target Start/End: Original strand, 14193641 - 14193763
Alignment:
Q  162 gcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattttt-gggttgttaaggtgtttagggtgtttggaggatgcgtgt-ccgtt 257  Q
    ||||||||||| ||||||| |  |||||||| ||||||||||||    |||||| |||||||||||||||||||||| ||||||||| ||| || |||||    
T  14193641 gcctttgttactcgggtccttattcgtcgtcactagctcttgttcgcgatttttggggttgttaaggtgtttagggtttttggaggaagcgagtcccgtt 14193740  T
Q  258 gcgatgagccttttccttttgat 280  Q
    | | || ||||||||||||||||    
T  14193741 gagttgtgccttttccttttgat 14193763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 119 - 253
Target Start/End: Complemental strand, 34476173 - 34476037
Alignment:
Q  119 gtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcatttttggg 216  Q
    |||||||||  ||||||||||||||||||||| ||   |  || ||| ||||||||||||||||| |||||||| ||||||||||||  |  |||||| |    
T  34476173 gtgaggaggggggtgtttgttggggtgatttccttaaaaagcaacctatgttacacgggtccatgttcgtcgtctctagctcttgtttgtgctttttgag 34476074  T
Q  217 ttgttaaggtgtttagggtgtttggaggatgcgtgtc 253  Q
    | ||| ||||||||| || ||||||||| || |||||    
T  34476073 tggtttaggtgtttacggagtttggagggtgggtgtc 34476037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 244
Target Start/End: Complemental strand, 1653276 - 1653176
Alignment:
Q  144 tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttggag 243  Q
    |||||||| ||||||   |||| |||||  |||||||||  |||| ||||||||||||||||| | |||| |||||||| ||||||||| |||||| |||    
T  1653276 tgatttctattggaggttgcctctgttattcgggtccatactcgttgtcgctagctcttgtttgagttttaggttgttatggtgtttagagtgttttgag 1653177  T
Q  244 g 244  Q
    |    
T  1653176 g 1653176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 19176159 - 19176251
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| ||| |||||| |||| |||||||||||||||| ||||||   | |||||||||||||||||  || || ||||| |||||||||||||    
T  19176159 tttaagtgtggaggcgggtgcttgttggggtgatttcctttggaagtaacctttgttacacgggtctttgttcatcgtcactagctcttgttt 19176251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 2394683 - 2394591
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| |||||||||| |||| |||||||||||||||| ||  ||  || ||||||||||| ||||||||  | |||||| ||| |||||||||    
T  2394683 tttaagtgaggaggcgggtgcttgttggggtgatttccttaagaagcaacctttgttacatgggtccatatttgtcgtctctaactcttgttt 2394591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 4464368 - 4464323
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttggggtgatttctttt 154  Q
    |||| |||||||||| |||| |||||||| ||||||||||||||||    
T  4464368 tgttgtttaggtgagtaggcgggtgtttgatggggtgatttctttt 4464323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 254
Target Start/End: Original strand, 29087204 - 29087346
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    |||||| ||||||||||||||| |||||||||||||  | ||||  || ||| ||||||| ||||||||| |||||||| ||||||||||||  |  |||    
T  29087204 tttaggcgaggaggcaggtgttggttggggtgattttctatggaagcaacctctgttacatgggtccatgttcgtcgtcactagctcttgtttgtgtttt 29087303  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    |||||| ||| ||||||||| || |||||||||||||||||||    
T  29087304 ttgggtggtttaggtgtttacggagtttggaggatgcgtgtcc 29087346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 109 - 245
Target Start/End: Complemental strand, 26046395 - 26046256
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttggggt-gatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt- 206  Q
    |||| |||||||||| |||| ||||||||||||||| |||||||||||||||| |||| |||||| ||||||| || ||||| || |||||||||||||     
T  26046395 tgttgtttaggtgagtaggcgggtgtttgttggggttgatttcttttggagactgcctctgttactcgggtccttgttcgtcttcactagctcttgtttg 26046296  T
Q  207 catttttgggttg-ttaaggtgtttagggtgtttggagga 245  Q
      |||||||| || || ||||||||||||||||| |||||    
T  26046295 tgtttttggggtgttttaggtgtttagggtgtttagagga 26046256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 254
Target Start/End: Complemental strand, 7195672 - 7195523
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttgg-ggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt- 206  Q
    |||| |||| |||||||||||||||||| |||  |||||||||||||  |||| || | |||||| ||||||| || | || ||| |||||||||||||     
T  7195672 tgttgtttacgtgaggaggcaggtgtttattgtaggtgatttcttttatagactgcttatgttactcgggtccttgtttgttgtcactagctcttgttta 7195573  T
Q  207 catt--tttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    ||||  |||||||| |||||||||||||||||||||||||| ||||||||    
T  7195572 cattgttttgggttattaaggtgtttagggtgtttggaggaagcgtgtcc 7195523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 24072659 - 24072546
Alignment:
Q  141 gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttg 240  Q
    |||||||||||||| ||| | |||| |||||  |||||||||  |||| ||||||||||||||||| | ||||||||||||||||||||||||||| ||     
T  24072659 gggtgatttcttttagaggccgcctctgttattcgggtccatattcgttgtcgctagctcttgtttaagttttgggttgttaaggtgtttagggtgcttt 24072560  T
Q  241 gaggatgcgtgtcc 254  Q
     ||| |||||||||    
T  24072559 aagggtgcgtgtcc 24072546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 244
Target Start/End: Complemental strand, 13954728 - 13954525
Alignment:
Q  44 ttttttggactcggatttggtatctgaacggttgacggatgagagctacatttgggggtgg-tagatgttatttaggtgaggaggcaggtgtttgttggg 142  Q
    |||||| |||||||||||||| || ||||||||   ||| | |||||| |||  ||||||| ||| |||| ||||||||||||| | |||||||||||||    
T  13954728 tttttttgactcggatttggtgtcggaacggtttgtggacgggagctatattacggggtggctag-tgttgtttaggtgaggagacgggtgtttgttggg 13954630  T
Q  143 g-tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt-catttttgg-gttgttaaggtgtttagggtgttt 239  Q
    | ||||||| | |||||   || |||||||  | ||||  || |||||||| ||||||||||||| | ||| ||| ||||||||||||||||||||||||    
T  13954629 ggtgatttcctctggaggttgcgtttgttattcaggtctttgttcgtcgtcactagctcttgtttgcgtttctggagttgttaaggtgtttagggtgttt 13954530  T
Q  240 ggagg 244  Q
    |||||    
T  13954529 ggagg 13954525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 8730649 - 8730711
Alignment:
Q  174 cgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtg 236  Q
    |||||||||  |||| | ||||| ||||||||| | ||||| |||||||||||||||||||||    
T  8730649 cgggtccattttcgttgacgctacctcttgtttgagttttgagttgttaaggtgtttagggtg 8730711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 27712819 - 27712871
Alignment:
Q  185 tcgtcgtcgctagctcttgtttca-tttttgggttgttaaggtgtttagggtg 236  Q
    |||| ||||||| ||||||||||| ||||||||| | ||||||||||||||||    
T  27712819 tcgttgtcgctacctcttgtttcagtttttgggtggctaaggtgtttagggtg 27712871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 36 - 244
Target Start/End: Original strand, 57768 - 57981
Alignment:
Q  36 ggtcgtgg-ttttttggactcggatttggtatctgaacggttgacggatgagagctacatttgggggtggtagatgttatttaggtgaggaggcaggtgt 134  Q
    |||||||| ||||||||||| ||||||||| |  ||| ||||  |||| ||||| || ||  ||||||||    |||||||||||||||||||  |||||    
T  57768 ggtcgtggcttttttggacttggatttggtgttggaatggtttgcggacgagagttatataagggggtggcttgtgttatttaggtgaggaggtgggtgt 57867  T
Q  135 ttgttgggg--tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttca--tttttgggttgttaaggtgttt 230  Q
    |||||||||  || |||||||||||| |  ||| ||| || |  |||| || |||||||| ||||||| |||||    ||||||||||||||||||||||    
T  57868 ttgttggggggtggtttcttttggaggctacctctgtaactcatgtccttgttcgtcgtcactagctcatgtttgcgttttttgggttgttaaggtgttt 57967  T
Q  231 agggtgtttggagg 244  Q
    ||||||||||||||    
T  57968 agggtgtttggagg 57981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 244
Target Start/End: Complemental strand, 10248982 - 10248845
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttca 208  Q
    |||| ||||||||||||||  |||||||| |||||||||||||| |||||   | |  |||||| ||||||| |  |||||||| ||||||||||||| |    
T  10248982 tgttgtttaggtgaggaggagggtgtttgctggggtgatttcttctggaggttgtcgctgttactcgggtccttattcgtcgtcactagctcttgtttga 10248883  T
Q  209 --tttttgggttgttaaggtgtttagggtgtttggagg 244  Q
      ||||||| ||||||||||||||| ||||||||||||    
T  10248882 gttttttggattgttaaggtgtttaaggtgtttggagg 10248845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 245
Target Start/End: Complemental strand, 17657438 - 17657297
Alignment:
Q  107 gatgttatttaggtgaggaggcaggtgtttgttgg-ggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt 205  Q
    |||||| ||||||||||||||| | |||| ||||| |||||||| |||||||| | |||| |||||  ||||||| || | || ||| ||||||||||||    
T  17657438 gatgttgtttaggtgaggaggcggatgttcgttggaggtgatttgttttggaggctgcctctgttattcgggtccttgtttgttgtcactagctcttgtt 17657339  T
Q  206 t-catttttgggt-tgttaaggtgtttagggtgtttggagga 245  Q
    | ||||||||||  |||||||||||||| |||||||||||||    
T  17657338 tgcatttttgggactgttaaggtgtttatggtgtttggagga 17657297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 34389403 - 34389311
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| |||||||||| |||| |||||||||||||||| ||| ||  || ||| ||||||||||||||||| |||||||| |||||||||||||    
T  34389403 tttaagtgaggaggcgggtgcttgttggggtgatttcctttagaagcaacctctgttacacgggtccatgttcgtcgtcactagctcttgttt 34389311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 36630493 - 36630585
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| |||||||||| |||| |||||||||||||||| ||||||  || ||| |||||||||||||| || |||||||| |||||||||||||    
T  36630493 tttatgtgaggaggcgggtgcttgttggggtgatttcctttggaagcaacctctgttacacgggtccttgttcgtcgtcactagctcttgttt 36630585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 254
Target Start/End: Complemental strand, 15821812 - 15821663
Alignment:
Q  107 gatgttatttaggtgaggaggcaggtgtttgttggggtgatttc-ttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt 205  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| |||||||| |||||| | || || ||||||||  | |||||| |  |||||||||    
T  15821812 gatgttgtttaggtgaggaggcgggtgtttgttggggtgatttctttttggaggcagcctctatttcatgggtccatatttgtcgtcacgtgctcttgtt 15821713  T
Q  206 -tcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
      |  ||||| |||||| ||||| | ||| |||||||||| |||||||||    
T  15821712 ggcgcttttgagttgtttaggtgctaaggttgtttggagggtgcgtgtcc 15821663  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 280
Target Start/End: Complemental strand, 37987284 - 37987114
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    |||| |||| ||||| ||||||||||||||||||||| ||| ||  || | ||||||||| |||| |||| |||||||| ||||||||||||  |  |||    
T  37987284 tttaagtgaagaggcgggtgtttgttggggtgatttcctttagaagcaacttttgttacatgggtacatgttcgtcgtcactagctcttgtttgtgtttt 37987185  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcg-atgagccttttccttttgat 280  Q
    | |||| ||| ||||||||| || ||| ||||| |||||||| ||||| |  ||||||||||| |||||||    
T  37987184 tcgggtggtttaggtgtttacggagttaggagggtgcgtgtcacgttgtgtttgagccttttctttttgat 37987114  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 32066720 - 32066628
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| |||||||||  ||||||||||||||||||||| ||| ||  || ||| ||||||| |||| |||| |||||||| |||||||||||||    
T  32066720 tttaagtgaggaggtgggtgtttgttggggtgatttcctttagaagcaacctctgttacatgggtacatgttcgtcgtcactagctcttgttt 32066628  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 242
Target Start/End: Complemental strand, 24995817 - 24995690
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    |||| |||||||||  |||| |||||||||||||||  ||| ||  || ||| |||||||||||||||||||   |||| ||||||||||||  |  |||    
T  24995817 tttaagtgaggaggtgggtgcttgttggggtgattttctttagaagcaacctctgttacacgggtccatggt---cgtcactagctcttgttagtgcttt 24995721  T
Q  212 ttgggttgttaaggtgtttagggtgtttgga 242  Q
    |||||| ||| ||||||||| || |||||||    
T  24995720 ttgggtggtttaggtgtttacggagtttgga 24995690  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 30236490 - 30236377
Alignment:
Q  141 gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttg 240  Q
    ||||||||||| |||||| | |||| ||||   ||||| |||  |||| ||||||||||||| ||| | || |||||||| |||||||||||||| |||     
T  30236490 gggtgatttctattggaggccgcctctgtttttcgggttcatactcgttgtcgctagctcttatttgagttgtgggttgtcaaggtgtttagggtatttt 30236391  T
Q  241 gaggatgcgtgtcc 254  Q
    |||| || ||||||    
T  30236390 gagggtgtgtgtcc 30236377  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 18690160 - 18690228
Alignment:
Q  186 cgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    ||||||||||||||||||||| | | |||| |||||||||||||| ||||| || |||  |||||||||    
T  18690160 cgtcgtcgctagctcttgtttgagtattggattgttaaggtgttttgggtgctttgagcgtgcgtgtcc 18690228  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 34866464 - 34866375
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttg 203  Q
    |||| |||||||||  |||| ||||| |||||||||| ||| ||  || ||| |||||||||||| |||| ||||||||  |||||||||    
T  34866464 tttaagtgaggaggtgggtgcttgttagggtgatttcctttagaagcaacctctgttacacgggttcatgttcgtcgtcaatagctcttg 34866375  T

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Target: scaffold0119 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 42574 - 42432
Alignment:
Q  107 gatgttat-ttaggtgaggaggcaggtgtttgtt-ggggtgatttcttttggagacagcctttgttacacgggtccatg-gtcgtcgtcgctagctcttg 203  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||||| |||||   |||| | |||| ||||||| ||  |||||||| ||||||||||    
T  42574 gatgttatgttaggtgaggaggcgggtgtttgttgggggtgatttcttctggaggttgcctctattactcgggtccttgtttcgtcgtcactagctcttg 42475  T
Q  204 ttt-cattttt-gggttgttaaggtgtttagggtgtttggagg 244  Q
    ||| | ||||| |||||||||| ||||||| ||||||||||||    
T  42474 tttgcgtttttggggttgttaaagtgtttatggtgtttggagg 42432  T

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Target: scaffold0068 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 280
Target Start/End: Complemental strand, 36181 - 36028
Alignment:
Q  130 ggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcat---ttttgggttgttaaggt 226  Q
    ||||||||||||||||||||| ||| ||  || ||| |||| || |||||||||  ||||||| ||||||||||||| ||   |||||||| ||| ||||    
T  36181 ggtgtttgttggggtgatttcctttagaagcaacctatgtttcaagggtccatgtccgtcgtctctagctcttgttt-atgccttttgggtggtttaggt 36083  T
Q  227 gtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    |||||  | ||||| ||| || ||||| ||||| | |||||||||||||||||||    
T  36082 gtttacagagtttgaagggtgagtgtcacgttgtgttgagccttttccttttgat 36028  T

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Target: scaffold0050 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 245
Target Start/End: Original strand, 36340 - 36495
Alignment:
Q  97 gggggtggtagatgttatttaggtgaggaggcaggtgtttgttgg--ggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgc 194  Q
    ||||||||| | | || |||||||||||||||||||||||  |||  |||||||||||| ||||   |||| |||||| ||||||| || ||||||||      
T  36340 gggggtggttggttttgtttaggtgaggaggcaggtgttttgtgggtggtgatttctttgggaggttgcctctgttactcgggtccttgttcgtcgtcag 36439  T
Q  195 tagctcttgtt----tcatttttgggttgttaaggtg-tttagggtgtttggagga 245  Q
    |||||||||||    |  |||| |||||||||||||| |||||||||||| |||||    
T  36440 tagctcttgttcacgtttttttggggttgttaaggtgttttagggtgtttagagga 36495  T

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Target: scaffold0062 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 46784 - 46866
Alignment:
Q  148 ttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgttt 230  Q
    |||||||| || | |||| |||||  |||||||||   ||||||||||||||||||||| | |||||| ||||||||||||||    
T  46784 ttcttttgaaggccgcctctgttattcgggtccatatccgtcgtcgctagctcttgtttgagttttggattgttaaggtgttt 46866  T

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Target: scaffold0062; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 59349 - 59417
Alignment:
Q  186 cgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    ||||||||||||||||||||| | | |||| |||||||||||||| |||||  | ||| ||||||||||    
T  59349 cgtcgtcgctagctcttgtttgagtattggattgttaaggtgttttgggtgccttgagcatgcgtgtcc 59417  T

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Target: scaffold0062; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 71457 - 71525
Alignment:
Q  186 cgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    ||||||||||||||||||||| | | |||| |||||||||||||| ||||| || |||  |||||||||    
T  71457 cgtcgtcgctagctcttgtttgagtattggattgttaaggtgttttgggtgctttgagcgtgcgtgtcc 71525  T

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Target: scaffold1613 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 1359 - 1296
Alignment:
Q  191 tcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    |||||||||||||||| | |||||||| |||||| ||||||||||| || |||| || ||||||    
T  1359 tcgctagctcttgtttgagttttgggtcgttaagatgtttagggtgctttgagggtgtgtgtcc 1296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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