View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6184_high_27 (Length: 253)
Name: NF6184_high_27
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6184_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 34720708 - 34720466
Alignment:
| Q |
1 |
ttacttacaaatcattcatttcacaatcatgcacattttaccgctctctcttatcttctaatatagtttagttctgcagatgggaagcaacagatgaatc |
100 |
Q |
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| T |
34720708 |
ttacttacaaatcattcatttcacaatcatgcacattttaccgctctctcttatcttctaatatagtttagttctgcagatgggaagcaacagatgaatc |
34720609 |
T |
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| Q |
101 |
catttgcctattcaaagactgctataaatttagccttgcaaaacatacaaaacagcgagttcccccgaataaaagattttcccttgaagtatgcaaaagt |
200 |
Q |
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| T |
34720608 |
catttgcctattcaaagactgctataaatttagccttgcaaaacatacaaaacagcgagttcccccgaataaaagattttcccttgaagtatgcaaaagt |
34720509 |
T |
|
| Q |
201 |
caacattggcacaccaagttttgtcactatgctatctgatgat |
243 |
Q |
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| T |
34720508 |
caacattggcacaccaagttttgtcactatgctatctgatgat |
34720466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 34725937 - 34725707
Alignment:
| Q |
12 |
tcattcatttcacaatcatgcacattttaccgctctctcttatcttctaatatagtttagttctgcagatgggaagcaacagatgaatccatttgcctat |
111 |
Q |
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| T |
34725937 |
tcattcatttcacaatgattcaaattttactgttgtcttctatcttctaatatattttggttctgcagatgggaagcaacagatgagtccatttactaat |
34725838 |
T |
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| Q |
112 |
tcaaagactgctataaatttagccttgcaaaacatacaaaacagcgagttcccccgaataaaagattttcccttgaagtatgcaaaagtcaacattggca |
211 |
Q |
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| T |
34725837 |
tccaagactgctacaaatttagcctggcaaaacatgcacaacagcaagctcccccaagcaaaagattttctcttgaagccttcaaaagacaacattgaca |
34725738 |
T |
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| Q |
212 |
caccaagttttgtcactatgctatctgatga |
242 |
Q |
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| T |
34725737 |
caccaagtactgtcactatgctttctcatga |
34725707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 34729995 - 34729803
Alignment:
| Q |
12 |
tcattcatttcacaatcatgcacattttaccgctctctcttatcttctaatatagtttagttctgcagatgggaagcaacagatgaatccatttgcctat |
111 |
Q |
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||||||||||| |||| || || ||||||| ||||||| || ||||||||||| ||| |||| |||||||| ||||||||||||| ||||||||| || |
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| T |
34729995 |
tcattcatttctcaatgattcaaattttactgctctcttataacttctaatatattttggttccgcagatggaaagcaacagatgagtccatttgctaat |
34729896 |
T |
|
| Q |
112 |
tcaaagactgctataaatttagccttgcaaaacatacaaaacagcgagttcccccgaataaaagattttcccttgaagtatgcaaaagtcaac |
204 |
Q |
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| T |
34729895 |
tcaaagactgctacaaatttagcctggcaaaacatgcagaacagcaagctcccccaagcaaaagattttctcttgaagcctgcaaaagacaac |
34729803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 38610529 - 38610395
Alignment:
| Q |
12 |
tcattcatttcacaatcatgcacattttaccgctctctcttatcttctaatatagtttagttctgcagatgggaagcaacagatgaatccatttgcctat |
111 |
Q |
| |
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||||||||||| | || ||||| ||||||| ||||| | |||||||||||| || ||||||||||||| ||||||||||||| ||||||||| || |
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| T |
38610529 |
tcattcatttcgcgatgatgcaaattttactattctcttctgtcttctaatatatttcggttctgcagatggaaagcaacagatgagtccatttgctaat |
38610430 |
T |
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| Q |
112 |
tcaaagactgctataaatttagccttgcaaaacat |
146 |
Q |
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| T |
38610429 |
tcaaagactgctacatatttagcctggcaaaacat |
38610395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 38795314 - 38795180
Alignment:
| Q |
12 |
tcattcatttcacaatcatgcacattttaccgctctctcttatcttctaatatagtttagttctgcagatgggaagcaacagatgaatccatttgcctat |
111 |
Q |
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||||||||||| | || ||||| ||||||| ||||| | |||||||||||| || ||||||||||||| ||||||||||||| ||||||||| || |
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| T |
38795314 |
tcattcatttcgcgattatgcaaattttactattctcttctgtcttctaatatatttcggttctgcagatggaaagcaacagatgagtccatttgctaat |
38795215 |
T |
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| Q |
112 |
tcaaagactgctataaatttagccttgcaaaacat |
146 |
Q |
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| T |
38795214 |
tcaaagactgctacatatttagcctggcaaaacat |
38795180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 23481207 - 23481164
Alignment:
| Q |
52 |
tatcttctaatatagtttagttctgcagatgggaagcaacagat |
95 |
Q |
| |
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| T |
23481207 |
tatcttctaatatattttagttctgcagatgagaagcaacagat |
23481164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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