View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6184_high_3 (Length: 612)
Name: NF6184_high_3
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6184_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 266 - 445
Target Start/End: Original strand, 42395880 - 42396053
Alignment:
| Q |
266 |
attaattgaaggctgtgtatgagaagaagagtatatgttattacccgtagaagaattcatcagtggatggaaatttcttatttctggaatctgatttatg |
365 |
Q |
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| T |
42395880 |
attaattgaaggttgtgtatgagaagaagagtatatgttattacccgtagaagaattcatcagtggaaggaaatttcttatttctggaatctgatttatg |
42395979 |
T |
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| Q |
366 |
aatttgtatatgaatatatttatttatttgctagtagtatattcttgcaaacagctagctgtccgtccaatgaaatgaaa |
445 |
Q |
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| T |
42395980 |
aatttgtatatgaatatatttattt----gctagt--tatattcttgcaaacagctagctgtccgtccaatgaaatgaaa |
42396053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 42395703 - 42395878
Alignment:
| Q |
38 |
atagatccaagtagaccaacgaacacataactaatctaacactaatgtgaggtaaatatttagagaggtgacttaccatgttcatgaatcctacatgcaa |
137 |
Q |
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| T |
42395703 |
atagatccaagtagaccaacgaacacataacta-----------atgtgaggtaaatatttagagaggtgacttaccatgttgatgaaccctacatgcaa |
42395791 |
T |
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| Q |
138 |
aacttgtgtttttcctggttgttgctttcttgagctccattttagcagttgcagtagtttctttggctgcagttacaagaagaacca |
224 |
Q |
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| T |
42395792 |
aacttgtgtttttcctggttgttgctttcttgtgctccattttagcagttgcagtagtttctttggctgcagttaaaagaagaacca |
42395878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 543 - 595
Target Start/End: Original strand, 42396121 - 42396173
Alignment:
| Q |
543 |
gtaacttgtaagaatcttccctccataaaaggacaaatttaattagggtccta |
595 |
Q |
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| T |
42396121 |
gtaacttgtaagaatcttccctccataaaaagacaaatttaattagggtccta |
42396173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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