View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6184_high_36 (Length: 230)
Name: NF6184_high_36
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6184_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 5 - 207
Target Start/End: Complemental strand, 31281967 - 31281765
Alignment:
| Q |
5 |
cagaaataacaacaacaacaataactcgattttagagcctagaaattcgaactcaagttcgaatttcgaatttgtgttgttggaattcattattcccttc |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31281967 |
cagaaataacaacaacaacaataactcgattttagagcctaggaattcgaattcaaattcgaatttcgaatttgtgttgttggaattcattattcccttc |
31281868 |
T |
|
| Q |
105 |
attctgaaattcacttagtgatgttgtgttaataatgttgttctggaattcagtttgtattgattgttgttcaggtaaaagaaagggaaacagaaatcta |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31281867 |
attctgaaattcacttagtgatgttgtgttaataatgttgttctgaaattcagtttgtattgattgttgttcaggtaaaagaaagggaaacagaaatcca |
31281768 |
T |
|
| Q |
205 |
agg |
207 |
Q |
| |
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||| |
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| T |
31281767 |
agg |
31281765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 55424758 - 55424950
Alignment:
| Q |
15 |
aacaacaacaataactcgattttagagcctagaaattcgaactcaagttcgaatttcgaatttgtgttgttggaattcattattcccttcattctgaaat |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55424758 |
aacaacaacaataactcgattttagagcctagaaattcgaattcaaattcgaatttcgaatttgtgttgttggaattcattattcccttcattctgaaat |
55424857 |
T |
|
| Q |
115 |
tcacttagtgatgttgtgttaataatgttgttctggaattcagtttgtattgattgttgttcaggtaaaagaaagggaaacagaaatctaagg |
207 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55424858 |
tcacttagtgatgttgtgttaataatgttgttttgaaattcagtttgtattgattgttgttcaggtaaaagaaagggaaacagaaatccaagg |
55424950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 5 - 207
Target Start/End: Complemental strand, 28656547 - 28656345
Alignment:
| Q |
5 |
cagaaataacaacaacaacaataactcgattttagagcctagaaattcgaactcaagttcgaatttcgaatttgtgttgttggaattcattattcccttc |
104 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28656547 |
cagaaataacaacaacaacaataacttgattttagagcctagaaattcaaattcaaattcgaatttcaaatttgtgttgttggaattcattattcccttc |
28656448 |
T |
|
| Q |
105 |
attctgaaattcacttagtgatgttgtgttaataatgttgttctggaattcagtttgtattgattgttgttcaggtaaaagaaagggaaacagaaatcta |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
28656447 |
attctgaaattcacttagtgatgttgtgttaataatgttgttctggaattcagtttgtattgattgttgttcaggtaaaagaaagggaaacaaaaatcca |
28656348 |
T |
|
| Q |
205 |
agg |
207 |
Q |
| |
|
||| |
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|
| T |
28656347 |
agg |
28656345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 208
Target Start/End: Complemental strand, 11243452 - 11243323
Alignment:
| Q |
85 |
tggaattcattattcccttcattctgaaattcacttagtgatgttgt------gttaataatgttgttctggaattcagtttgtattgattgttgttcag |
178 |
Q |
| |
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||||||||| ||||||||||||| || ||||||||| ||| |||||| ||||||||||||||||| ||| ||| |||||||||||||| ||||| |
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| T |
11243452 |
tggaattcactattcccttcattatggaattcactttgtgttgttgttgttgtgttaataatgttgttctagaaatcactttgtattgattgtatttcag |
11243353 |
T |
|
| Q |
179 |
gtaaaagaaagggaaacagaaatctaagga |
208 |
Q |
| |
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|||||||||||||||| |||||| ||||| |
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|
| T |
11243352 |
gtaaaagaaagggaaagggaaatcgaagga |
11243323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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