View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6184_high_5 (Length: 569)

Name: NF6184_high_5
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6184_high_5
NF6184_high_5
[»] chr7 (5 HSPs)
chr7 (9-352)||(46064789-46065137)
chr7 (403-553)||(46064588-46064751)
chr7 (287-344)||(23780474-23780531)
chr7 (287-344)||(43920612-43920669)
chr7 (287-344)||(40706111-40706168)
[»] chr4 (3 HSPs)
chr4 (282-352)||(26929290-26929360)
chr4 (287-343)||(49152545-49152601)
chr4 (287-344)||(38393572-38393629)
[»] chr1 (20 HSPs)
chr1 (287-344)||(29812834-29812891)
chr1 (287-344)||(48040178-48040235)
chr1 (287-344)||(48042230-48042287)
chr1 (287-344)||(48049412-48049469)
chr1 (287-343)||(5126509-5126565)
chr1 (287-343)||(48033108-48033164)
chr1 (287-343)||(48034716-48034772)
chr1 (287-343)||(48035763-48035819)
chr1 (287-343)||(48041329-48041385)
chr1 (287-343)||(48050614-48050670)
chr1 (287-343)||(48055948-48056004)
chr1 (278-344)||(39972795-39972861)
chr1 (287-344)||(22908329-22908386)
chr1 (287-340)||(29813662-29813715)
chr1 (287-343)||(48042840-48042896)
chr1 (282-343)||(48036721-48036782)
chr1 (287-344)||(48050018-48050075)
chr1 (287-344)||(48053132-48053189)
chr1 (292-343)||(48054322-48054373)
chr1 (287-344)||(48054684-48054741)
[»] chr6 (4 HSPs)
chr6 (287-343)||(992452-992508)
chr6 (274-344)||(10754606-10754676)
chr6 (287-336)||(32678635-32678684)
chr6 (287-344)||(10750289-10750346)
[»] chr3 (7 HSPs)
chr3 (287-343)||(34974808-34974864)
chr3 (287-343)||(47565687-47565743)
chr3 (287-343)||(53682987-53683043)
chr3 (287-344)||(31125758-31125815)
chr3 (287-344)||(38930480-38930537)
chr3 (287-344)||(53107644-53107701)
chr3 (291-352)||(32170503-32170564)
[»] chr2 (6 HSPs)
chr2 (287-343)||(6796502-6796558)
chr2 (287-343)||(7181569-7181625)
chr2 (287-343)||(13327006-13327062)
chr2 (287-344)||(6801063-6801120)
chr2 (287-344)||(35926134-35926191)
chr2 (287-344)||(39990585-39990642)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 9 - 352
Target Start/End: Complemental strand, 46065137 - 46064789
Alignment:
Q  9 aatattggggagataaaattaaacttacactgttgctggtggtgttagacatttttgttccaaaaataagcgattctag------agaaaattggttatt 102  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||      ||||||||||  |||    
T  46065137 aatattggggagataaaattaaacttacactgttgcttgtggtgttagacatttttgttcgaaaaataagcgattctagttctagagaaaattgga-att 46065039  T
Q  103 aggatgatgagtgaaggtgttcgttgatgattgatt----tgaaacagaataaaatttgaattggggattt-aggagtgaaacgaaaccctagttaaatt 197  Q
    ||||||||||||||||||||||||| ||||||||||    ||||||||||||||||||||||||||||||| |||||||||||     ||||||||||||    
T  46065038 aggatgatgagtgaaggtgttcgtttatgattgattgatttgaaacagaataaaatttgaattggggattttaggagtgaaac-----cctagttaaatt 46064944  T
Q  198 ttgcgagaaagacaaaaacaaggaaaactcttctactaattgaaataattatataatttacaacatcaaatcgaatatcaaaacgggtgtttggtctagt 297  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  46064943 ttgcgagaaagacaaaaacaatgaaaactctcctactaattgaaataattatataatttacaacattaaatcgaacatcaaaacgggtgtttggtctagt 46064844  T
Q  298 ggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcgcaacaccc 352  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46064843 ggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcgcaacaccc 46064789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 403 - 553
Target Start/End: Complemental strand, 46064751 - 46064588
Alignment:
Q  403 attgaggagtgtaacaaaatcaagtatactatatttagttttgctcagacactgaatagtgaatatgatttcatcaacaaatccaacaagaaggaa---- 498  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  46064751 attgaggagtgtatcaaaatcaagtatactatatttagttttgctcagacactgaatagtgaatatgatttcatcaacaaatccaacaagaaggaagaaa 46064652  T
Q  499 ---------agtaataatcggagaggaaacaaagttaatccaaaagaacaatgtggatatcaag 553  Q
             |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46064651 acacgttgtagtaataatcagagaggaaacaaagttaatccaaaagaacaatgtggatatcaag 46064588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 23780474 - 23780531
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||| |||||||    
T  23780474 tttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 23780531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 43920612 - 43920669
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||| |||||||    
T  43920612 tttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 43920669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 40706111 - 40706168
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    ||||||||||| ||||||||| |||||  |||||||||||||  |||||| |||||||    
T  40706111 tttggtctagttgtatgattctcgcttaaggtgcgagaggtcccgagttcaattctcg 40706168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 26929360 - 26929290
Alignment:
Q  282 gggtgtttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcgcaacaccc 352  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26929360 gggtgtttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcgcaacaccc 26929290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 49152601 - 49152545
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctc 343  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||    
T  49152601 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 49152545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 38393629 - 38393572
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||| |||||||    
T  38393629 tttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 38393572  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 29812891 - 29812834
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  ||||||||||||||    
T  29812891 tttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcg 29812834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 48040178 - 48040235
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  ||||||||||||||    
T  48040178 tttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcg 48040235  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 48042230 - 48042287
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    ||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||    
T  48042230 tttggtctagtggtatgattctcgcttcgggtgcgagaggttccgagttcgattctcg 48042287  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 48049412 - 48049469
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  ||||||||||||||    
T  48049412 tttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcg 48049469  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 5126509 - 5126565
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctc 343  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||    
T  5126509 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 5126565  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 48033108 - 48033164
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctc 343  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||    
T  48033108 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 48033164  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 48034716 - 48034772
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctc 343  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||    
T  48034716 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 48034772  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 48035763 - 48035819
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctc 343  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||    
T  48035763 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 48035819  T

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Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 48041329 - 48041385
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctc 343  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||    
T  48041329 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 48041385  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 48050614 - 48050670
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctc 343  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||    
T  48050614 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 48050670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 48055948 - 48056004
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctc 343  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||    
T  48055948 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 48056004  T

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Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 39972861 - 39972795
Alignment:
Q  278 aaacgggtgtttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    |||||||  ||||||||||||||||||||| ||||| ||||||||||||||  |||||| |||||||    
T  39972861 aaacgggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 39972795  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 22908329 - 22908386
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||| |||||||    
T  22908329 tttggtctagtggtatgattctcgcttagggtgcgagaggtctcgagttcaattctcg 22908386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 29813715 - 29813662
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgatt 340  Q
    |||||||||||||| |||||| ||||| |||||||||||||| |||||||||||    
T  29813715 tttggtctagtggtttgattctcgctttgggtgcgagaggtcctgagttcgatt 29813662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 48042840 - 48042896
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctc 343  Q
    ||||||||||||||||||||| ||||| |||||||||||| |  |||||||||||||    
T  48042840 tttggtctagtggtatgattctcgctttgggtgcgagaggcccggagttcgattctc 48042896  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 48036721 - 48036782
Alignment:
Q  282 gggtgtttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctc 343  Q
    |||| ||||||||||||||||||||| ||||| |||||| |||||||  ||||| |||||||    
T  48036721 gggtatttggtctagtggtatgattctcgctttgggtgccagaggtccggagtttgattctc 48036782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 48050018 - 48050075
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    ||||||||||||||||||||| ||||| ||||| |||||||   ||||||||||||||    
T  48050018 tttggtctagtggtatgattctcgctttgggtgtgagaggttccgagttcgattctcg 48050075  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 48053132 - 48053189
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    |||||||||||||||| |||| ||||| ||||||||||||||  |||||| |||||||    
T  48053132 tttggtctagtggtataattctcgctttgggtgcgagaggtcccgagttcaattctcg 48053189  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 48054322 - 48054373
Alignment:
Q  292 tctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctc 343  Q
    |||||||  ||||||| ||||| |||||||||||||| ||||||||||||||    
T  48054322 tctagtgaaatgattctcgctttgggtgcgagaggtcctgagttcgattctc 48054373  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 48054684 - 48054741
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    |||||||||| |||||||||| ||||| |||||||||||||   |||||| |||||||    
T  48054684 tttggtctagaggtatgattctcgctttgggtgcgagaggttccgagttcaattctcg 48054741  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 992508 - 992452
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctc 343  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||    
T  992508 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 992452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 10754676 - 10754606
Alignment:
Q  274 atcaaaacgggtgtttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    ||||||| |||  ||||||||||||||||||||| ||||| ||||||||||||||  |||||| |||||||    
T  10754676 atcaaaaagggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 10754606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 32678684 - 32678635
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttc 336  Q
    ||||||||||||||||||||| ||||| ||||| |||||||| |||||||    
T  32678684 tttggtctagtggtatgattctcgctttgggtgtgagaggtcctgagttc 32678635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 10750346 - 10750289
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    |||| |||||||||||||||| ||||| |||||| |||||||  |||||| |||||||    
T  10750346 tttgatctagtggtatgattctcgcttagggtgcaagaggtcccgagttcaattctcg 10750289  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 34974808 - 34974864
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctc 343  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||    
T  34974808 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 34974864  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 47565743 - 47565687
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctc 343  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||    
T  47565743 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 47565687  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 53682987 - 53683043
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctc 343  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||    
T  53682987 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 53683043  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 31125758 - 31125815
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||| |||||||    
T  31125758 tttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 31125815  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 38930537 - 38930480
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||| |||||||    
T  38930537 tttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 38930480  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 53107644 - 53107701
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||| |||||||    
T  53107644 tttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 53107701  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 32170503 - 32170564
Alignment:
Q  291 gtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcgcaacaccc 352  Q
    |||||||||||||||||  |||| |||||||||||||||  |||| ||||||  ||||||||    
T  32170503 gtctagtggtatgattctagcttggggtgcgagaggtcgcaagtttgattcttccaacaccc 32170564  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 6796502 - 6796558
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctc 343  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||    
T  6796502 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 6796558  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 7181569 - 7181625
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctc 343  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||    
T  7181569 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 7181625  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 13327062 - 13327006
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctc 343  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||    
T  13327062 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 13327006  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 6801120 - 6801063
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||| |||||||    
T  6801120 tttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 6801063  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 35926191 - 35926134
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||| |||||||    
T  35926191 tttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 35926134  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 39990585 - 39990642
Alignment:
Q  287 tttggtctagtggtatgattcccgcttcgggtgcgagaggtcgtgagttcgattctcg 344  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||| |||||||    
T  39990585 tttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcg 39990642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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