View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6184_high_7 (Length: 492)

Name: NF6184_high_7
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6184_high_7
NF6184_high_7
[»] chr1 (5 HSPs)
chr1 (11-473)||(28921972-28922448)
chr1 (11-253)||(28909406-28909645)
chr1 (13-98)||(28914052-28914137)
chr1 (353-429)||(28909771-28909847)
chr1 (194-249)||(28914544-28914599)
[»] chr7 (2 HSPs)
chr7 (11-64)||(40288497-40288550)
chr7 (192-252)||(40288676-40288736)


Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Original strand, 28921972 - 28922448
Alignment:
Q  11 catcatcaaatttaccaagagcattctccaagaattcaaaagtaggacctgattcagaataaccaatttaaaggtctattttacatttgaaagaagaaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28921972 catcatcaaatttaccaagagcattctccaagaattcaaaagtaggacctgattcagaataaccaatttaaaggtctattttacatttgaaagaagaaaa 28922071  T
Q  111 taaatctttcatccacttatagacttaatcatcttactggattgttgcacagtatccccttttagtgaaacaaacagttccttggtgaaggtatcaacat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28922072 taaatctttcatccacttatagacttaatcatcttactggattgttgcacagtatccccttttagtgaaacaaacagttccttggtgaaggtatcaacat 28922171  T
Q  211 gtgataacaactgctcagcaaactctttcttggcaggatcctacnnnnnnntaatactaaaaatcagttttcttaat-aaaaaggtttcaaatttcaaac 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||       | |||||||||||||||||||||||| ||||||||||||||||||||||    
T  28922172 gtgataacaactgctcagcaaactctttcttggcaggatcctacaaaaaaattatactaaaaatcagttttcttaataaaaaaggtttcaaatttcaaac 28922271  T
Q  310 atgaggtagggcaccaca-------------tgcagtagttgcaattgcaacgtaatcacaattgaccatggtctcatcaaccttaattgacctcacagt 396  Q
    ||||| ||||||||||||             | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28922272 atgagctagggcaccacataaaggtttaggtttcagtagttgcaattgcaacgtaatcacaattgaccatggtctcatcaaccttaattgacctcacagt 28922371  T
Q  397 atcaatgatcacaattcgactgtgatttaaaaccttgcttaacatcaacagtccattgcctgtaaggtgggaactgc 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28922372 atcaatgatcacaattcgactgtgatttaaaaccttgcttaacatcaatagtccattgcctgtaaggtgggaactgc 28922448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 28909406 - 28909645
Alignment:
Q  11 catcatcaaatttaccaagagcattctccaagaattcaaaagtaggacctgattcagaataaccaatttaaaggtctattttacatttgaaagaagaaaa 110  Q
    ||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| |||||| ||||| ||||||||||||| | |||||| ||| | |    
T  28909406 catcatcaaattttccaagagcattctccaagaattcaatagcaggacctgattcaaaataactaattttaaggtctattttataattgaaaaaaggaga 28909505  T
Q  111 taaatctttcatccacttatagacttaatcatcttactggattgttgcacagtatccccttttagtgaaacaaacagttccttggtgaaggtatcaacat 210  Q
    ||   || || |||| |||||  | ||| |||| ||| |||||| ||||| |||||| |||||| ||||   || |  ||  ||||||| ||||||||||    
T  28909506 ta---ctctcctccatttataagcataaacatcataccggattgatgcacggtatcctcttttaatgaattgaaaaagtctctggtgaatgtatcaacat 28909602  T
Q  211 gtgataacaactgctcagcaaactctttcttggcaggatccta 253  Q
    | |||| ||||| |||| | | |||||||||||||||||||||    
T  28909603 gggatagcaactactcaccgagctctttcttggcaggatccta 28909645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 28914052 - 28914137
Alignment:
Q  13 tcatcaaatttaccaagagcattctccaagaattcaaaagtaggacctgattcagaataaccaatttaaaggtctattttacattt 98  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||| ||||||  ||||||||| ||||    
T  28914052 tcatcaaatttaccaagagcattctccaagaaatcagaagcaggacctgattcaaaataaccattttaaaaatctattttatattt 28914137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 353 - 429
Target Start/End: Original strand, 28909771 - 28909847
Alignment:
Q  353 tcacaattgaccatggtctcatcaaccttaattgacctcacagtatcaatgatcacaattcgactgtgatttaaaac 429  Q
    ||||||| |||| | ||||||| | ||||||||||||||||| |||||| |||||||||  ||||||||||||||||    
T  28909771 tcacaatagaccgtagtctcattagccttaattgacctcacaatatcaaggatcacaatatgactgtgatttaaaac 28909847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 28914544 - 28914599
Alignment:
Q  194 ggtgaaggtatcaacatgtgataacaactgctcagcaaactctttcttggcaggat 249  Q
    |||||| ||||||||||| ||||||||||||||| | |||||||||||||||||||    
T  28914544 ggtgaatgtatcaacatgggataacaactgctcaccgaactctttcttggcaggat 28914599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 40288497 - 40288550
Alignment:
Q  11 catcatcaaatttaccaagagcattctccaagaattcaaaagtaggacctgatt 64  Q
    |||||||||||||||||||||||||||||||| | ||||| | |||||||||||    
T  40288497 catcatcaaatttaccaagagcattctccaagtaatcaaaggcaggacctgatt 40288550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 40288676 - 40288736
Alignment:
Q  192 ttggtgaaggtatcaacatgtgataacaactgctcagcaaactctttcttggcaggatcct 252  Q
    |||||||| ||||||||||| || | |||||| ||| ||||||||||||| ||||||||||    
T  40288676 ttggtgaatgtatcaacatgagaaatcaactgatcaccaaactctttctttgcaggatcct 40288736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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