View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6184_low_1 (Length: 658)
Name: NF6184_low_1
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6184_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 1 - 641
Target Start/End: Original strand, 33879373 - 33880010
Alignment:
| Q |
1 |
gaaaataaaacaagaagagatttgaataattaaaaaataaccacgatcatgcatgcagttagttattaggtactctcgttcttccatcccaaagcttgtt |
100 |
Q |
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| T |
33879373 |
gaaaataaaacaagaagagatttgaataattaaaaaataaccatgatcatgcatgcagttagttattaggtactctccttcttccatcccaaagcttgtt |
33879472 |
T |
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| Q |
101 |
tgatcattgccattgctttctcgcagattccactcccagcattgacttgtacttcaaactccaagtcatgatggaaagtttccaacgaagcaccacactc |
200 |
Q |
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| T |
33879473 |
tgatcattgccattgctttctcgcagattccactcccagcattgacttgtacttcaaactccaagtcatgatggaaagtttccaacgaagcaccacactc |
33879572 |
T |
|
| Q |
201 |
cttaaactttgtatacaaacggcggtaagcactccgtaacgacacctgaaaagattccctaacctcaataaccgtcgaagaattgtcggtgttgctgctg |
300 |
Q |
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| T |
33879573 |
cttaaactttgtatacaaacggcggtaagcactccgtaacgacacctgaaaagactccctaacctcaataaccgtcgaagaattgtcgcggttgct---g |
33879669 |
T |
|
| Q |
301 |
ctgctgtccatggtgttgtaaccataatacccaaccctcacgtgcccattcacgtactctttacacgcagcgagaagaacatgtcctcgttcacgaaagt |
400 |
Q |
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| T |
33879670 |
ctgctgtccatggtgttgtaaccataatacccaaccctcacgtgcccattcacgtactctttacacgcagcgagaagaacatgtcctcgttcacgaaagt |
33879769 |
T |
|
| Q |
401 |
gttccttaacaaatacttcaaaattctttggcggtgtccgaatgatcaaatatgcagcgtgacacgttttaacaaaaacatcttcattgtatgtaaatga |
500 |
Q |
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| T |
33879770 |
gttccttaacaaatacttcaaaattctttggcggtgtccgaatgatcaaatatgcagcgtgacacgttttaacaaaaacatcttcattgtatgtaaatga |
33879869 |
T |
|
| Q |
501 |
cttggtttcatggaaagaacgtttgaatatacggtaaaaaggctcgttaaaaagtgggcactcgttaagtacaagtgcttgaatagagaccaaaagctga |
600 |
Q |
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| T |
33879870 |
cttggtttcatggaaagaacgtttgaatatacggtaaaaaggctcgttaaaaagtgggcactcgttaagtacaagtgcttgaatagagaccaaaagctga |
33879969 |
T |
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| Q |
601 |
agaagtgtagacctagatgggtcccacttctcgccctttgt |
641 |
Q |
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| T |
33879970 |
agaagtgtagacctagttgggtcccacttctcgccctttgt |
33880010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 314 - 443
Target Start/End: Complemental strand, 16665961 - 16665832
Alignment:
| Q |
314 |
tgttgtaaccataatacccaaccctcacgtgcccattcacgtactctttacacgcagcgagaagaacatgtcctcgttcacgaaagtgttccttaacaaa |
413 |
Q |
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|||||||| ||||||||||||| ||| | | |||||||| |||||| |||| ||||| ||||||||||| |||| |||||||||||||||||| ||||| |
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| T |
16665961 |
tgttgtaattataatacccaaccatcaagcgtccattcacatactctctacatgcagcaagaagaacatgacctctttcacgaaagtgttccttcacaaa |
16665862 |
T |
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| Q |
414 |
tacttcaaaattctttggcggtgtccgaat |
443 |
Q |
| |
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| T |
16665861 |
aacctcaaaattcttaggtggtttccgaat |
16665832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 314 - 443
Target Start/End: Complemental strand, 17640331 - 17640202
Alignment:
| Q |
314 |
tgttgtaaccataatacccaaccctcacgtgcccattcacgtactctttacacgcagcgagaagaacatgtcctcgttcacgaaagtgttccttaacaaa |
413 |
Q |
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|||||||| ||||||||||||| ||| | | |||||||| |||||| |||| ||||| ||||||||||| |||| |||||||||||||||||| ||||| |
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| T |
17640331 |
tgttgtaattataatacccaaccatcaagcgtccattcacatactctctacatgcagcaagaagaacatgacctctttcacgaaagtgttccttcacaaa |
17640232 |
T |
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| Q |
414 |
tacttcaaaattctttggcggtgtccgaat |
443 |
Q |
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| T |
17640231 |
aacctcaaaattcttaggtggtttccgaat |
17640202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 314 - 443
Target Start/End: Complemental strand, 16684363 - 16684234
Alignment:
| Q |
314 |
tgttgtaaccataatacccaaccctcacgtgcccattcacgtactctttacacgcagcgagaagaacatgtcctcgttcacgaaagtgttccttaacaaa |
413 |
Q |
| |
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|||||||| ||||||||||||| |||| | |||||||| |||||| |||| ||||| ||||| ||||| |||| |||||||||||||||||| ||||| |
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| T |
16684363 |
tgttgtaattataatacccaaccatcacacgtccattcacatactctctacatgcagcaagaagtacatgacctctttcacgaaagtgttccttcacaaa |
16684264 |
T |
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| Q |
414 |
tacttcaaaattctttggcggtgtccgaat |
443 |
Q |
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| T |
16684263 |
atcctcaaaattcttaggtggtttccgaat |
16684234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 314 - 443
Target Start/End: Complemental strand, 17658599 - 17658470
Alignment:
| Q |
314 |
tgttgtaaccataatacccaaccctcacgtgcccattcacgtactctttacacgcagcgagaagaacatgtcctcgttcacgaaagtgttccttaacaaa |
413 |
Q |
| |
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|||||||| ||||||||||||| |||| | |||||||| |||||| |||| ||||| ||||| ||||| |||| |||||||||||||||||| ||||| |
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| T |
17658599 |
tgttgtaattataatacccaaccatcacacgtccattcacatactctctacatgcagcaagaagtacatgacctctttcacgaaagtgttccttcacaaa |
17658500 |
T |
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| Q |
414 |
tacttcaaaattctttggcggtgtccgaat |
443 |
Q |
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| T |
17658499 |
atcctcaaaattcttaggtggtttccgaat |
17658470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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