View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6184_low_12 (Length: 428)
Name: NF6184_low_12
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6184_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 222 - 417
Target Start/End: Original strand, 2056389 - 2056575
Alignment:
| Q |
222 |
aagttgtttagaactcaagtctgccgcaccggaacaaacttagtaaaaggtgtaccggaacagtagccccctttaggctatggggctaaaaggcctatca |
321 |
Q |
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| T |
2056389 |
aagttgtttagaactcaagtctgccgcaccggaacaaacttagtaaaaggtgtaccggaacagtagccccctttaggcta---------aaggcctatca |
2056479 |
T |
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| Q |
322 |
accatcgcatgtggcttatgtccttattgtagtttcaatgttttgacctcaaatcttagacaccgcttttctaaggtattgtccgcattgagtatt |
417 |
Q |
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| T |
2056480 |
accatcgcatgtggcttatgtccttattgtagtttcaatgttttgacctcaaatcttagacaccgcttttctaaggtattgtccgcattgagtatt |
2056575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 2056185 - 2056323
Alignment:
| Q |
18 |
aaaaaagacaagcatgttcatatttactttctccatgctttaattatcatatcatccaagggtcaagtaaatagacataatacatataagaatagatatg |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2056185 |
aaaaaagacaagcatgttcatatttactttcttcatgctttaattatcatatcatccaagggtcaagtaaatagacataatacatataagaatagatatg |
2056284 |
T |
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| Q |
118 |
ttactgttacttacagtaaattgtaatcaatttgacagc |
156 |
Q |
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| T |
2056285 |
ttactgttacttacagtaaattgtaatcaatttgacagc |
2056323 |
T |
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