View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6184_low_13 (Length: 424)
Name: NF6184_low_13
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6184_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 4111669 - 4112061
Alignment:
| Q |
18 |
ttatttgcatttaatattgtttgtggggttcaaggatgttacagtgcaaagtgaaggcaagcagcaagatgactttcatcctctctttgtttctagagta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
4111669 |
ttatttgcatttaatattgtttgtggggttcaaggatgttaccgtgcaaggtgaaggcaaggagcaagatgactttcatcctctctttgtttatagagta |
4111768 |
T |
|
| Q |
118 |
tgttttgtaatttcttgtttgtttatattttcggttatcactattaactaagcactctaagattagggattttaagatggacatatatttatttgttaga |
217 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4111769 |
tgttttgtaatttcttgtttgtatatattttcggttatcactagtaactaagcactctaagattagggattttaagatggacatat--ttatttgttaga |
4111866 |
T |
|
| Q |
218 |
tttaattaatgcaattttttgttcagttatgatctaagcttagtttaattttcacttgttccgaacgttcaatgcttttcaaacaaagtgtcatgttcta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
4111867 |
tttaattaatgcaattttttgttcagttatgatctaagcttagtttaattttcacttgtttcgaacgttcaatgcttttcaaacaaggtgtcatgttcta |
4111966 |
T |
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| Q |
318 |
tgatgattgaactttagggttagggttaatagattgagaaccttccttgatttgaatgtaatgggaacatatgaatttccttaaaagcctatgct |
412 |
Q |
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| T |
4111967 |
tgatgattgaattttagggttagggttaatagattgggaaccttccttgatttgaatgtaatgggaacatatgaatttccttaaaagcctatgct |
4112061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 5699718 - 5699760
Alignment:
| Q |
18 |
ttatttgcatttaatattgtttgtggggttcaaggatgttaca |
60 |
Q |
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| T |
5699718 |
ttatttgcattaaatattgtttgtagggttcaaggatgttaca |
5699760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 39249697 - 39249629
Alignment:
| Q |
162 |
taactaagcactctaagattagggattttaagatggacatatatttatttgttagatttaattaatgcaa |
231 |
Q |
| |
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||||||| |||||||||||||||| || ||| ||| || | |||||||||||| |||||||||||||||| |
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| T |
39249697 |
taactaaacactctaagattaggg-ttctaaaatgaacctctatttatttgttggatttaattaatgcaa |
39249629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 5712974 - 5713014
Alignment:
| Q |
18 |
ttatttgcatttaatattgtttgtggggttcaaggatgtta |
58 |
Q |
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|
| T |
5712974 |
ttatttgcattaaatattgcttgtggggttcaagggtgtta |
5713014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 39438090 - 39438043
Alignment:
| Q |
75 |
caagcagcaagatgactttcatcctctctttgtttctagagtatgttt |
122 |
Q |
| |
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|||||| ||||| || || ||||||||||||||||||||||||||||| |
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|
| T |
39438090 |
caagcaacaagaggagttccatcctctctttgtttctagagtatgttt |
39438043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 15663321 - 15663366
Alignment:
| Q |
18 |
ttatttgcatttaatattgtttgtggggttcaaggatgttacagtg |
63 |
Q |
| |
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||||||||||| |||||||||||| |||||||||| ||||| |||| |
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| T |
15663321 |
ttatttgcattaaatattgtttgtagggttcaagggtgttatagtg |
15663366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 11476221 - 11476179
Alignment:
| Q |
18 |
ttatttgcatttaatattgtttgtggggttcaaggatgttaca |
60 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||| ||||||| |
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| T |
11476221 |
ttatttgcattaaatattgtttgtggagttcaagggtgttaca |
11476179 |
T |
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