View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6184_low_17 (Length: 368)
Name: NF6184_low_17
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6184_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 119 - 346
Target Start/End: Original strand, 2651002 - 2651229
Alignment:
| Q |
119 |
tgttgagagatgaataattgtggttcaaatctgtgctccaacgtataaaagtctcttgcaactattacatgaattgtacttgcaactaccgctataagaa |
218 |
Q |
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| T |
2651002 |
tgttgagaggtgaataattgtggttcaaatctgtgctccaacgtataaaagtctcttgcaactactacatgaattgtacttgcaactactgctataagaa |
2651101 |
T |
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| Q |
219 |
taagaaaaactatgtgattatatgagcatttattatannnnnnnggtaacctttcgattacaaaggaaatgacccctaaaaatatgaaattttggttaaa |
318 |
Q |
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| T |
2651102 |
taagaaaaactatgtgattatatgagcatttattatatttttttggtaacctttcgattacaaaggaaatgacccctaaaaatatgaaattttggttaaa |
2651201 |
T |
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| Q |
319 |
ctcattaaccacttgaatttaatttctt |
346 |
Q |
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| T |
2651202 |
ttcattaatcacttgagtttaatttctt |
2651229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 2650858 - 2650952
Alignment:
| Q |
1 |
tgagtcatgggatttccttggtgnnnnnnn-gttagtgccaaggttttaaacttataattagaattagagatatctctctcaactatggttcaagtg |
96 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
2650858 |
tgagtcatgggatttccttggtgaaaaaaaagttagtgccaaggttttaaacttataattagaattagagata--tctctgaactatggttcaagtg |
2650952 |
T |
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