View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6184_low_2 (Length: 627)

Name: NF6184_low_2
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6184_low_2
NF6184_low_2
[»] chr5 (1 HSPs)
chr5 (10-419)||(5006518-5006923)
[»] chr7 (4 HSPs)
chr7 (114-225)||(46383476-46383584)
chr7 (150-226)||(36777898-36777974)
chr7 (114-226)||(24912084-24912192)
chr7 (150-190)||(4225730-4225770)
[»] chr1 (2 HSPs)
chr1 (133-226)||(47377626-47377718)
chr1 (1-33)||(7827561-7827593)
[»] chr3 (2 HSPs)
chr3 (176-226)||(42913312-42913362)
chr3 (165-223)||(46103765-46103823)
[»] chr4 (1 HSPs)
chr4 (189-225)||(31350315-31350351)


Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 419
Target Start/End: Complemental strand, 5006923 - 5006518
Alignment:
Q  10 tggctatagccacaccaaaattctctcagttgttttttacacacggagaatgtctagaaaaatgaagtgttggagaaagttgatggnnnnnnnngtctta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||        ||||||    
T  5006923 tggctatagccacaccaaaattctctcagttgttttttacacacggagaatgtgtagaaaaatgaagtgttggagaaagttgacggtttattttgtctta 5006824  T
Q  110 aatcaacaattgttagagttataataaatagacatagaccaataaaatttgctgaaataaaactactaaaactgttattttgaaataaatagtatagtct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||    
T  5006823 aatcaacaattgttagagttataataaatagacatagaccaataaaatttgctcaaataaaactactaaaactgttattttgaaataaatagta--gtct 5006726  T
Q  210 ttaatttcattgagcaannnnnnnnngattactttattgttttagccacaccaaaaattaatcatggatccgcctaaaaccctcacacctctgctcttta 309  Q
    |||||||||||||||||          |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  5006725 ttaatttcattgagcaatttttttt--attactttattgttttagccacaccaaaaattaatcatgggtccacctaaaaccctcacacctctgctcttta 5006628  T
Q  310 tcgacttgagtgtcagagtgtccgcatgtataaatccacaccgttccagagctttcaaacactagaacaaccgcactgaatattatttatcttatcaggt 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  5006627 tcgacttgagtgtcagagtgtccgcatgtataaatccacaccgttccagagctttcaaacactagaacaaccgcgctgaacattatttatctgatcaggt 5006528  T
Q  410 acaatcacac 419  Q
    ||||||||||    
T  5006527 acaatcacac 5006518  T

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Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 114 - 225
Target Start/End: Complemental strand, 46383584 - 46383476
Alignment:
Q  114 aacaattgttagagttataataaatagacatagaccaataaaatttgctgaaataaaactactaaaactgttattttgaaataaatagtatagtctttaa 213  Q
    |||||||||||| |||||||   ||||||||| || | ||||||||||  ||||||||  ||||||||||||||||| ||| |||||||| | |||||||    
T  46383584 aacaattgttagggttataa---atagacataaactagtaaaatttgcccaaataaaataactaaaactgttattttaaaagaaatagtacaatctttaa 46383488  T
Q  214 tttcattgagca 225  Q
    ||||||||||||    
T  46383487 tttcattgagca 46383476  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 36777898 - 36777974
Alignment:
Q  150 aataaaatttgctgaaataaaactactaaaactgttattttgaaataaatagtatagtctttaatttcattgagcaa 226  Q
    ||||||||||||| ||| ||||||||||||||| || |||| ||  |||||||||||||||||||||||||||||||    
T  36777898 aataaaatttgctcaaacaaaactactaaaactattgttttcaatgaaatagtatagtctttaatttcattgagcaa 36777974  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 24912192 - 24912084
Alignment:
Q  114 aacaattgttagagttataataaatagacatagaccaataaaatttgctgaaataaaactactaaaactgttattttgaaataaatagtatagtctttaa 213  Q
    |||||||||||| |||||||||    |||||| || |||||  |||||  |||||||| |||||||| |||||||||||   |||||||||||| |||||    
T  24912192 aacaattgttagggttataata----gacatacactaataatttttgcccaaataaaattactaaaaatgttattttgattgaaatagtatagtttttaa 24912097  T
Q  214 tttcattgagcaa 226  Q
    |||||||||||||    
T  24912096 tttcattgagcaa 24912084  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 4225730 - 4225770
Alignment:
Q  150 aataaaatttgctgaaataaaactactaaaactgttatttt 190  Q
    ||||||||| ||| ||||||||||||||||||| |||||||    
T  4225730 aataaaattagctcaaataaaactactaaaactattatttt 4225770  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 47377626 - 47377718
Alignment:
Q  133 ataaatagacatagaccaataaaatttgctgaaataaaactactaaaactgttattttgaaataaatagtatagtctttaatttcattgagcaa 226  Q
    ||||||||||||   | ||||||| ||||  |||||||||||||||| |||||||||||||  ||||| ||| ||||||||||| |||||||||    
T  47377626 ataaatagacatgagctaataaaacttgcccaaataaaactactaaa-ctgttattttgaatgaaataatatcgtctttaatttaattgagcaa 47377718  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 7827561 - 7827593
Alignment:
Q  1 tgcaattcatggctatagccacaccaaaattct 33  Q
    |||||||||||||||||||||||||||||||||    
T  7827561 tgcaattcatggctatagccacaccaaaattct 7827593  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 42913362 - 42913312
Alignment:
Q  176 taaaactgttattttgaaataaatagtatagtctttaatttcattgagcaa 226  Q
    ||||||||||||||||||  ||||||| |||| ||||||||||||||||||    
T  42913362 taaaactgttattttgaatgaaatagtttagtttttaatttcattgagcaa 42913312  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 46103765 - 46103823
Alignment:
Q  165 aataaaactactaaaactgttattttgaaataaatagtatagtctttaatttcattgag 223  Q
    |||||||||| ||||| || |||||| ||  ||||||||||||||||||||||||||||    
T  46103765 aataaaactattaaaaatgatattttaaatgaaatagtatagtctttaatttcattgag 46103823  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 31350351 - 31350315
Alignment:
Q  189 ttgaaataaatagtatagtctttaatttcattgagca 225  Q
    |||||| |||||||||||| |||||||||||||||||    
T  31350351 ttgaaagaaatagtatagtgtttaatttcattgagca 31350315  T

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