View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6184_low_20 (Length: 315)
Name: NF6184_low_20
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6184_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 31202055 - 31201764
Alignment:
| Q |
9 |
taatactagaattcaaaattaagtattataacttaataataacacagcaataagagtaaaaaattattacaacaataagaagaggaataatgagattcaa |
108 |
Q |
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| T |
31202055 |
taataatagaattcaaaattaagtattataacttaataataacacaacaataagagtaaaaaattattacaacaataagaagaggaataatgagattcaa |
31201956 |
T |
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| Q |
109 |
gatgacatataccatcacttgttaattgtcgctaaaagttatagtataataatgaatcaacagcaataataacaataaatttgtcnnnnnnntaataatc |
208 |
Q |
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| T |
31201955 |
gatgacatataccatcacttgttaattgtcgctaaaagttatagtataataatgaatcaacagcaataataacaataaatttgtcaaaaaaataataatc |
31201856 |
T |
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| Q |
209 |
agaatattaagaatgataccctgattgttttgttaccaatggttatggtactgctgaagtctctatctaatgtactagcagcaattgtgaat |
300 |
Q |
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| T |
31201855 |
agaatattaagaatgataccctgattgtttggttaccaatggttatggtactgctgaagtctctatctaatgtactagcagcaattgtgaat |
31201764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 151 - 300
Target Start/End: Original strand, 31063256 - 31063404
Alignment:
| Q |
151 |
agtataataatgaatcaacagcaataata--acaataaatttgtcnnnnnnntaataatcagaatattaagaatgataccctgattgttttgttaccaat |
248 |
Q |
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| T |
31063256 |
agtataataataaattaacagcaataatatcacaataaatatgtcaaaaagaaaaaaatcagaatattaagaat---accctaattatttggtcaccaat |
31063352 |
T |
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| Q |
249 |
ggttatggtactgctgaagtctctatctaatgtactagcagcaattgtgaat |
300 |
Q |
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| T |
31063353 |
ggttatggtactgctgaagtctctgtcaattgtactagcagcaactgtgaat |
31063404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 31050864 - 31050931
Alignment:
| Q |
225 |
taccctgattgttttgttaccaatggttatggtactgctgaagtctctatctaatgtactagcagcaa |
292 |
Q |
| |
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|||| ||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||| |
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| T |
31050864 |
taccgtgactgttttgttaccaatggttatagtactgctgaagtctctatcaattgtactagcagcaa |
31050931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 214 - 292
Target Start/End: Original strand, 31108405 - 31108483
Alignment:
| Q |
214 |
attaagaatgataccctgattgttttgttaccaatggttatggtactgctgaagtctctatctaatgtactagcagcaa |
292 |
Q |
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| T |
31108405 |
attaaggataataccgtgagtgttttgttaccaatggtcatgacactgctgaagtctctgtctaatgtactagcagcaa |
31108483 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 292
Target Start/End: Original strand, 31146156 - 31146233
Alignment:
| Q |
215 |
ttaagaatgataccctgattgttttgttaccaatggttatggtactgctgaagtctctatctaatgtactagcagcaa |
292 |
Q |
| |
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||||| |||||||| ||| |||||||||| ||| || ||| ||||||||||||||| ||||||||||||||||||| |
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| T |
31146156 |
ttaaggatgataccgtgagtgttttgttattaatagtcatgacactgctgaagtctctgtctaatgtactagcagcaa |
31146233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 292
Target Start/End: Original strand, 31163982 - 31164059
Alignment:
| Q |
215 |
ttaagaatgataccctgattgttttgttaccaatggttatggtactgctgaagtctctatctaatgtactagcagcaa |
292 |
Q |
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||||| |||||||| ||| |||| ||||| |||||| ||| ||||||||||||||| ||||||||||||||||||| |
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| T |
31163982 |
ttaaggatgataccgtgagtgttctgttattaatggtcatgacactgctgaagtctctgtctaatgtactagcagcaa |
31164059 |
T |
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