View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6184_low_21 (Length: 315)
Name: NF6184_low_21
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6184_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 296
Target Start/End: Original strand, 12470399 - 12470685
Alignment:
| Q |
10 |
acatcatcactagagtttttagacataaaagagaaatttaggacatgnnnnnnnnnacttaaacacaa-gattttatttgatttgcttctgcttaatatg |
108 |
Q |
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| T |
12470399 |
acatcataactagagttttcagacataagagagaaatttaggatatgtttttttttacttaaacacaaagattttatttgatttgcttctgcttaatatg |
12470498 |
T |
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| Q |
109 |
ttacaacacttcnnnnnnnnaaagttgaggaggtacactaaaagatgaaaacaaaattattcatacacatgtcattataaaacatcattgacatgcttta |
208 |
Q |
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| T |
12470499 |
ttacaacacttcttctttt-atagctaaggaggtacactaaaagatgaaaacaaaattattcatacacatgtcattataaaacatcattgacatgcttta |
12470597 |
T |
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| Q |
209 |
caattatgcaagacatgttcatgacacttttgactcacatgtcaaattattgacatattttaaattaaaaaacgaaaatacaactatt |
296 |
Q |
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| T |
12470598 |
caattatgcaagacatgttcatgacacttttgactcacatggcaaattattgacatattttaaattaaaaaacgaaaatacaactatt |
12470685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 657938 - 657853
Alignment:
| Q |
173 |
acacatgtcattataaaacatcattgacatgctttacaattatgcaagacatgttcatgacacttttgactcacatgtcaaattatt |
259 |
Q |
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| T |
657938 |
acacatgtcactataaa-cattattgaaaagctttacaattatggaagacatacttatgacacttttgactaacatgtcacattatt |
657853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 49758867 - 49758822
Alignment:
| Q |
141 |
gtacactaaaagatgaaaacaaaattattcatacacatgtcattat |
186 |
Q |
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| T |
49758867 |
gtacactaaaagatgaaaacataattattcatgttcatgtcattat |
49758822 |
T |
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