View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6184_low_24 (Length: 284)

Name: NF6184_low_24
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6184_low_24
NF6184_low_24
[»] chr4 (3 HSPs)
chr4 (1-197)||(33879195-33879391)
chr4 (140-189)||(33878620-33878669)
chr4 (219-273)||(33879128-33879182)
[»] scaffold0386 (2 HSPs)
scaffold0386 (124-273)||(676-825)
scaffold0386 (140-189)||(1284-1333)
[»] chr5 (5 HSPs)
chr5 (124-273)||(13869741-13869890)
chr5 (124-197)||(27641421-27641494)
chr5 (144-189)||(13869240-13869285)
chr5 (144-189)||(27640875-27640920)
chr5 (219-273)||(27641344-27641398)
[»] chr8 (3 HSPs)
chr8 (124-197)||(38460872-38460945)
chr8 (140-182)||(38460427-38460469)
chr8 (219-273)||(38460794-38460848)
[»] chr7 (3 HSPs)
chr7 (124-197)||(29735101-29735174)
chr7 (219-273)||(29735198-29735252)
chr7 (147-189)||(29735715-29735759)
[»] chr3 (3 HSPs)
chr3 (140-197)||(49850835-49850892)
chr3 (140-183)||(49851428-49851471)
chr3 (219-273)||(49850914-49850968)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 8e-98; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 33879391 - 33879195
Alignment:
Q  1 ctcttcttgttttattttcttatggtgaagtttgtttctctcaagtctcttttgaatatgaaatttttctagtttcaatttataatgaaatgtttccggt 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||    
T  33879391 ctcttcttgttttattttcatatggtgaagtttgtttctctcaagtctctttcgagtatgaaatttttctagtttcaatttataatgaaatgtttctggt 33879292  T
Q  101 ttcaatttatgactaaagtaaatgagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcatta 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33879291 ttcaatttatgactaaagtaaatgagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcatta 33879195  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 33878620 - 33878669
Alignment:
Q  140 gaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgaca 189  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33878620 gaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgaca 33878669  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 33879182 - 33879128
Alignment:
Q  219 tgaaaatagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 273  Q
    |||||||||||| |||||||| |||||||||||||||| |||||||||| |||||    
T  33879182 tgaaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgtc 33879128  T

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Target: scaffold0386 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 124 - 273
Target Start/End: Original strand, 676 - 825
Alignment:
Q  124 gagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcattannnnnnnnnatttnnnnnnnntgaaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||         ||||        |||||    
T  676 gagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgacatatcattatttttttttatttaaaaaaaatgaaa 775  T
Q  224 atagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 273  Q
    ||||||| |||||||| |||||||||||||||| |||||||||| |||||    
T  776 atagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgtc 825  T

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Target: scaffold0386; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 1333 - 1284
Alignment:
Q  140 gaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgaca 189  Q
    ||||||||||||||||||| |||||||||||||||||| ||||| |||||    
T  1333 gaaacgtacataacatgtgacacttacaaacatccaataaaatcatgaca 1284  T

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Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 124 - 273
Target Start/End: Complemental strand, 13869890 - 13869741
Alignment:
Q  124 gagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcattannnnnnnnnatttnnnnnnnntgaaa 223  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||         ||||        |||||    
T  13869890 gagaaatttttacatagaaacgtacataacatgtggcacttacaaacattcaatgaaatcatgacatatcattattttttttaatttaaaaaaaatgaaa 13869791  T
Q  224 atagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 273  Q
    ||||||| |||||||| |||||||||||||| | |||||||||| |||||    
T  13869790 atagaaacagaaccatcgtcatccttttgcatcgtggtatagatcatgtc 13869741  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 27641494 - 27641421
Alignment:
Q  124 gagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcatta 197  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||    
T  27641494 gagaaatttttacatagaaacgtacatatcatgtggcacttacaaacattcaatgaaatcatgacatatcatta 27641421  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 13869240 - 13869285
Alignment:
Q  144 cgtacataacatgtggcacttacaaacatccaatgaaatcgtgaca 189  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  13869240 cgtacataacatgtggcacttacaaacatccaatgaaatcatgaca 13869285  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 27640875 - 27640920
Alignment:
Q  144 cgtacataacatgtggcacttacaaacatccaatgaaatcgtgaca 189  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  27640875 cgtacataacatgtggcacttacaaacatccaatgaaatcatgaca 27640920  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 27641398 - 27641344
Alignment:
Q  219 tgaaaatagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 273  Q
    |||||||||||| |||||||| |||||||||||||| | |||||||||| |||||    
T  27641398 tgaaaatagaaacagaaccatcgtcatccttttgcatcgtggtatagatcatgtc 27641344  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 38460945 - 38460872
Alignment:
Q  124 gagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcatta 197  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38460945 gagaaatttttacatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgacatatcatta 38460872  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 38460427 - 38460469
Alignment:
Q  140 gaaacgtacataacatgtggcacttacaaacatccaatgaaat 182  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38460427 gaaacgtacataacatgtggcacttacaaacatccaatgaaat 38460469  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 38460848 - 38460794
Alignment:
Q  219 tgaaaatagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 273  Q
    |||||||||||| |||||||| |||||||||||||||| |||||||||| |||||    
T  38460848 tgaaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgtc 38460794  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 29735101 - 29735174
Alignment:
Q  124 gagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcatta 197  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||  |||||||||||||    
T  29735101 gagaaattcttacatagaaacttacataacatgtggcacttacaaacatccaataaaattatgacatatcatta 29735174  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 29735198 - 29735252
Alignment:
Q  219 tgaaaatagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 273  Q
    |||||||||||| |||||||| ||||| |||||||| | |||||||||| |||||    
T  29735198 tgaaaatagaaacagaaccatcgtcattcttttgcatcgtggtatagatcatgtc 29735252  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 29735759 - 29735715
Alignment:
Q  147 acataacatgtggcacttacaaac--atccaatgaaatcgtgaca 189  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||    
T  29735759 acataacatgtggcacttacaaacatatccaatgaaatcatgaca 29735715  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 49850835 - 49850892
Alignment:
Q  140 gaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcatta 197  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  49850835 gaaacgtacataacatgtggcacttacaaacattcaatgaaatcatgacatatcatta 49850892  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 49851471 - 49851428
Alignment:
Q  140 gaaacgtacataacatgtggcacttacaaacatccaatgaaatc 183  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  49851471 gaaacatacataacatgtggcacttacaaacatccaatgaaatc 49851428  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 49850914 - 49850968
Alignment:
Q  219 tgaaaatagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 273  Q
    |||||||||||| | |||||| |||||||||||||| | |||||||||| |||||    
T  49850914 tgaaaatagaaacataaccatcgtcatccttttgcatcgtggtatagatcatgtc 49850968  T

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