View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6184_low_32 (Length: 246)

Name: NF6184_low_32
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6184_low_32
NF6184_low_32
[»] chr4 (38 HSPs)
chr4 (1-243)||(27554251-27554494)
chr4 (11-243)||(27444749-27444982)
chr4 (10-243)||(27431103-27431337)
chr4 (10-226)||(27557440-27557657)
chr4 (20-234)||(27501278-27501493)
chr4 (20-236)||(27526074-27526291)
chr4 (20-228)||(27486944-27487153)
chr4 (22-234)||(27498378-27498591)
chr4 (20-236)||(27513738-27513955)
chr4 (137-228)||(27479979-27480071)
chr4 (127-236)||(27473960-27474070)
chr4 (127-220)||(27502113-27502207)
chr4 (127-220)||(27505680-27505774)
chr4 (23-173)||(27570075-27570225)
chr4 (127-227)||(27516580-27516681)
chr4 (149-236)||(27466911-27466999)
chr4 (114-217)||(27567310-27567414)
chr4 (114-196)||(27411458-27411541)
chr4 (20-234)||(27502771-27502986)
chr4 (127-220)||(27460546-27460640)
chr4 (112-196)||(27571676-27571761)
chr4 (149-228)||(27476777-27476857)
chr4 (149-228)||(27523373-27523453)
chr4 (109-173)||(27527211-27527275)
chr4 (114-180)||(27508907-27508973)
chr4 (114-180)||(27524579-27524645)
chr4 (114-171)||(27415676-27415733)
chr4 (112-196)||(27419073-27419158)
chr4 (116-180)||(27490017-27490081)
chr4 (109-173)||(27506748-27506812)
chr4 (155-234)||(27507777-27507857)
chr4 (114-173)||(27478909-27478968)
chr4 (114-173)||(27485969-27486028)
chr4 (127-217)||(27500319-27500410)
chr4 (114-196)||(27563348-27563431)
chr4 (114-180)||(27424533-27424599)
chr4 (38-95)||(17970278-17970335)
chr4 (109-173)||(27497348-27497412)
[»] chr3 (10 HSPs)
chr3 (38-229)||(55084765-55084957)
chr3 (15-229)||(38024844-38025059)
chr3 (15-229)||(38031296-38031511)
chr3 (149-228)||(38028736-38028816)
chr3 (121-196)||(38043965-38044041)
chr3 (124-229)||(50910025-50910131)
chr3 (149-228)||(38040051-38040131)
chr3 (155-214)||(48840696-48840756)
chr3 (38-229)||(50904761-50904953)
chr3 (124-228)||(38036763-38036868)
[»] chr5 (3 HSPs)
chr5 (26-234)||(1754206-1754414)
chr5 (142-228)||(1759335-1759422)
chr5 (37-170)||(1756786-1756919)
[»] chr8 (3 HSPs)
chr8 (121-214)||(21634605-21634699)
chr8 (15-92)||(21607403-21607480)
chr8 (149-228)||(21604724-21604804)
[»] chr2 (1 HSPs)
chr2 (38-95)||(3073548-3073605)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 27554251 - 27554494
Alignment:
Q  1 ctggtatcctcaaaccaagcatcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  27554251 ctggtatcctcaaaccaagcatcttcaaaaggagtggatgtgccaaagggataccttgcagtatatgttggagaggaaatgaagcggtttgtgatatcaa 27554350  T
Q  101 tttctttgttaagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtag 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27554351 tttctttgttaagccaaccatcgtttcaagaattgctgaatcaagctgaggaacaatttggatatgatcatccaacgggtagtctcacaattccttgtag 27554450  T
Q  200 agaagacgttttcttagatattacttctcgtttgaatctgtgct 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27554451 agaagacgttttcttagatattacttctcgtttgaatctgtgct 27554494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 27444982 - 27444749
Alignment:
Q  11 caaaccaagcatcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgtt 110  Q
    |||||||| ||||||||||||| |||||||||||||||||||| ||||||| ||| | ||||||||||||||||  |||||||||  |||| || |  ||    
T  27444982 caaaccaaacatcttcaaaaggcgtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatactt 27444883  T
Q  111 aagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgtt 209  Q
     |||||| |||| |||||||||||  ||||||||||  |||||||||| |||||||| ||||||| |||| | |||||||||||||| ||||||||||||    
T  27444882 gagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgtt 27444783  T
Q  210 ttcttagatattacttctcgtttgaatctgtgct 243  Q
    ||||||||||||||||||||||||||||||||||    
T  27444782 ttcttagatattacttctcgtttgaatctgtgct 27444749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 27431337 - 27431103
Alignment:
Q  10 tcaaaccaagcatcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgt 109  Q
    ||||||||||||||||||||| |   | ||||||||||||||||  |||||| ||||| ||| || |||||||||  |||||||||  |||| || |  |    
T  27431337 tcaaaccaagcatcttcaaaatgcacgaatgtgccaaagggatatattgcagtatatgttggggatgaaatgaagaggtttgtgatcccaatatcatact 27431238  T
Q  110 taagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgt 208  Q
    | | |||||| || |||||||||||| ||||||||||  ||||||||||||||||||| |||||||| ||| | |||||||||||||| |||||||||||    
T  27431237 tgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaaccggtggtctcacaattccttgcagagaagacgt 27431138  T
Q  209 tttcttagatattacttctcgtttgaatctgtgct 243  Q
    ||||||| |||||||||||||||||||||||||||    
T  27431137 tttcttaaatattacttctcgtttgaatctgtgct 27431103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 27557440 - 27557657
Alignment:
Q  10 tcaaaccaagcatcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgt 109  Q
    |||||||||||||||||||| || ||||||||||||| |||||| ||||| | ||||| ||||||||||||||||  |||||||||  |||| || |  |    
T  27557440 tcaaaccaagcatcttcaaagggtgtggatgtgccaaggggatatcttgccgtatatgttggagaggaaatgaagaggtttgtgatcccaatgtcatact 27557539  T
Q  110 taagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgt 208  Q
    ||| ||||||||| |||||||||||||||||||||||| |||||||||||| ||||| |||||||| |||| | ||||| ||||| || |||||||| ||    
T  27557540 taaaccaaccatcatttcaagaattgctgaatcaagctgaggaacaatttgaatatgttcatccaatgggtggtctcactattccatgcagagaagatgt 27557639  T
Q  209 tttcttagatattacttc 226  Q
    |||||||||||| |||||    
T  27557640 tttcttagatatcacttc 27557657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 27501278 - 27501493
Alignment:
Q  20 catcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaacc 119  Q
    ||||||||||||| || || || ||||||||||  || |||| ||||| ||||||||||||||| | |||||||||  |||| || |  |||| ||||||    
T  27501278 catcttcaaaaggtgtcgaggttccaaagggatgtctagcagtatatgttggagaggaaatgaaacggtttgtgatcccaatatcatacttaaaccaacc 27501377  T
Q  120 atcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagat 218  Q
    || ||||||||| ||| |||| |||||  |||||||||||| ||| ||||||||||||||| | ||||| |||||||||||||||||| | |||||||||    
T  27501378 attgtttcaagacttgttgaaccaagccgaggaacaatttgaatacgatcatccaacgggtggtctcactattccttgtagagaagacatgttcttagat 27501477  T
Q  219 attacttctcgtttga 234  Q
    || |||||| ||||||    
T  27501478 atcacttcttgtttga 27501493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 27526291 - 27526074
Alignment:
Q  20 catcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaacc 119  Q
    ||||||||||||| || ||||| ||||||||||| || ||||  |||| ||||||| ||||||||| |||||||||  |  | || |  || | |||| |    
T  27526291 catcttcaaaaggtgtcgatgttccaaagggatatctagcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaac 27526192  T
Q  120 atcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagat 218  Q
     || || ||||||||| |||  |||||| |||||||||||| ||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||     
T  27526191 ctcattccaagaattgttgagccaagctgaggaacaatttgaatatgatcatccaacgggtggtctcactattccttgcagagaagacgttttcttagag 27526092  T
Q  219 attacttctcgtttgaat 236  Q
    || |||||||||||||||    
T  27526091 atcacttctcgtttgaat 27526074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 27486944 - 27487153
Alignment:
Q  20 catcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaacc 119  Q
    ||||||||||||  ||||| || ||||||||||| || ||||  || |  |||||| ||||||||| |||||||||  |  | || |  |||| ||||||    
T  27486944 catcttcaaaagctgtggacgttccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaacc 27487043  T
Q  120 atcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagat 218  Q
    |||||||||||||||| |||| |||||| | |||||||||| |||||||||||||| |||| | || || |||||||| | ||||||| |||||||||||    
T  27487044 atcgtttcaagaattgttgaaccaagctgaagaacaatttgaatatgatcatccaatgggtggtcttactattccttgcaaagaagacattttcttagat 27487143  T
Q  219 attacttctc 228  Q
    ||||||||||    
T  27487144 attacttctc 27487153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 27498378 - 27498591
Alignment:
Q  22 tcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccat 121  Q
    ||||||||||| |||||  ||||||||||||| || |||| ||||| ||||||||||||||| |  ||||||||  | || || |  || | ||||||||    
T  27498378 tcttcaaaaggcgtggacatgccaaagggatatctagcagtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccat 27498477  T
Q  122 cgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatat 220  Q
    |||| ||||| ||| |||| |||||  |||||||||| | |||||||||||||| |||| | ||||| ||||||||  |||||||| | |||||||||||    
T  27498478 cgttccaagacttgttgaaccaagccgaggaacaattcgaatatgatcatccaatgggtggtctcactattccttgcggagaagacatgttcttagatat 27498577  T
Q  221 tacttctcgtttga 234  Q
     |||||||||||||    
T  27498578 cacttctcgtttga 27498591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 27513955 - 27513738
Alignment:
Q  20 catcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaacc 119  Q
    ||||||||||||  || || |||||||| ||||| || ||||  ||||  |||||| ||||||||| |||||||||  |||| || |  || | |||| |    
T  27513955 catcttcaaaagctgttgacgtgccaaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaac 27513856  T
Q  120 atcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagat 218  Q
     ||||| ||||||||| |||| |||||| | ||||||| || |||||||||||||| |||| | ||||| |||||||| |||||||| || |||||||||    
T  27513855 ctcgttccaagaattgttgaaccaagctgaagaacaatatgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagtattcttagat 27513756  T
Q  219 attacttctcgtttgaat 236  Q
    || |||||||| ||||||    
T  27513755 atcacttctcgcttgaat 27513738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 27479979 - 27480071
Alignment:
Q  137 tgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctc 228  Q
    |||| |||||| |||||||||||| |||||||||||||| |||| | ||||| |||||||| ||||||||| ||||||||||||||| |||||    
T  27479979 tgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttagatattaattctc 27480071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 27473960 - 27474070
Alignment:
Q  127 caagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattactt 225  Q
    |||||||||||||  |||  | |||||||||||| |||||||||||||| |||| | ||||| ||||||||  ||||||||||||||||||| || ||||    
T  27473960 caagaattgctgagccaaagtgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcggagaagacgttttcttagacatcactt 27474059  T
Q  226 ctcgtttgaat 236  Q
    |||| ||||||    
T  27474060 ctcgcttgaat 27474070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 27502207 - 27502113
Alignment:
Q  127 caagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatat 220  Q
    ||||||||| |||| |||||| |||||||||||| |||||||||||||| |||| | || || |||||||| ||||||||| |||||||||||||    
T  27502207 caagaattgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaagacattttcttagatat 27502113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 27505774 - 27505680
Alignment:
Q  127 caagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatat 220  Q
    ||||||||| |||| |||||| |||||||||||| |||||| ||||||| |||| | ||||| |||||||| ||||||||  |||||||||||||    
T  27505774 caagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatgggtggtctcactattccttgcagagaagagattttcttagatat 27505680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 173
Target Start/End: Complemental strand, 27570225 - 27570075
Alignment:
Q  23 cttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatc 122  Q
    |||||||||  |||||||||||||||||||| ||||||| ||||| ||||||| ||  || || || ||||||  |  | || |  ||||||||||| ||    
T  27570225 cttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttc 27570126  T
Q  123 gtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatcc 173  Q
     |||||||| ||||||| ||||||| ||||| | || ||||||||||||||    
T  27570125 atttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcc 27570075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 27516681 - 27516580
Alignment:
Q  127 caagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattactt 225  Q
    ||||||||| |||| |||||| |||||||||||| |||||| ||||||| |||  | ||||| |||||||| | |||||| |||||||||||||| ||||    
T  27516681 caagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatggggggtctcactattccttgcaaagaagaagttttcttagatatcactt 27516582  T
Q  226 ct 227  Q
    ||    
T  27516581 ct 27516580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 27466911 - 27466999
Alignment:
Q  149 aggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctcgtttgaat 236  Q
    |||||||||||| |||||||||||||| |||| | ||||| |||||||| |||||||| ||||||||||| || |||||| | ||||||    
T  27466911 aggaacaatttgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagttttcttagacatcacttctagcttgaat 27466999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 27567310 - 27567414
Alignment:
Q  114 ccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttc 212  Q
    ||||||||||||||||||||| || |||||| |  | ||| ||||||| ||||||||||||| |||| | |||||||||||||| || ||||| | ||||    
T  27567310 ccaaccatcgtttcaagaattactaaatcaaacagaagaagaatttggttatgatcatccaatgggtggtctcacaattccttgcagcgaagatgctttc 27567409  T
Q  213 ttaga 217  Q
    |||||    
T  27567410 ttaga 27567414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 27411541 - 27411458
Alignment:
Q  114 ccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttg 196  Q
    ||||||||||||||||||||| || ||||||||  | ||| ||||||||||||||||||| | |||| | ||||||||||||||    
T  27411541 ccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttg 27411458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 27502986 - 27502771
Alignment:
Q  20 catcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaacc 119  Q
    |||||||||||||  ||||||||||||| ||||| ||||| |  ||||  |||||| | ||||||| |||||||||  |||| || |  || |  ||| |    
T  27502986 catcttcaaaaggcttggatgtgccaaaaggatatcttgccgtttatgtaggagagaagatgaagcggtttgtgattccaatgtcatatttgaatcaaac 27502887  T
Q  120 atcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagat 218  Q
     || |||||||| |||||||  ||||||  |||| ||||||||||||| ||||||| |||| | || || |||||||||  ||||||  ||||| |||||    
T  27502886 ttcatttcaagacttgctgagccaagctgtggaagaatttggatatgaccatccaatgggtggtcttactattccttgtgaagaagattttttcgtagat 27502787  T
Q  219 attacttctcgtttga 234  Q
    || |||||||| ||||    
T  27502786 atcacttctcgcttga 27502771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 27460546 - 27460640
Alignment:
Q  127 caagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatat 220  Q
    |||||||||||||  |||  | |||||||||||| |||||||||||||| |||| | ||||| |||||||| ||||||||| ||||||| |||||    
T  27460546 caagaattgctgagccaaagtgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatat 27460640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 27571676 - 27571761
Alignment:
Q  112 agccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttg 196  Q
    ||||| ||||||||||||||||| || |||||| |  | ||| ||||||||||||||||||||| |||| | ||||||||||||||    
T  27571676 agccagccatcgtttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtctcacaattccttg 27571761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 27476777 - 27476857
Alignment:
Q  149 aggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctc 228  Q
    |||||||||||| |||||||||||||| |||| | || || |||||||| ||||||||| ||||||| |||||||| ||||    
T  27476777 aggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaagacattttcttggatattacctctc 27476857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 27523453 - 27523373
Alignment:
Q  149 aggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctc 228  Q
    |||||||||||| |||||| ||||||| |||| | || || |||||||| | ||||||| |||||||||||||||||||||    
T  27523453 aggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaaagaagacattttcttagatattacttctc 27523373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 27527211 - 27527275
Alignment:
Q  109 ttaagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatcc 173  Q
    |||| |||||||||||||| ||| ||||||| ||||||| ||||| | |||||||||||||||||    
T  27527211 ttaaaccaaccatcgtttctagagttgctgagtcaagctgaggaagagtttggatatgatcatcc 27527275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 27508907 - 27508973
Alignment:
Q  114 ccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggt 180  Q
    |||||| || |||||||| ||| ||||||| ||| ||||| | ||||||||||||||||||||||||    
T  27508907 ccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggt 27508973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 27524579 - 27524645
Alignment:
Q  114 ccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggt 180  Q
    |||||| || |||||||| ||| ||||||||||| ||||| | ||||||||||||||||||| ||||    
T  27524579 ccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggt 27524645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 27415676 - 27415733
Alignment:
Q  114 ccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcat 171  Q
    |||||||||||||||||| ||| ||| ||||||| ||||| | |||||||||||||||    
T  27415676 ccaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcat 27415733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 27419158 - 27419073
Alignment:
Q  112 agccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttg 196  Q
    ||||| ||||||||||||||||| || |||||| |  | ||| ||||||||||||||||||||| |||| | || |||||||||||    
T  27419158 agccagccatcgtttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtcttacaattccttg 27419073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 27490017 - 27490081
Alignment:
Q  116 aaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggt 180  Q
    ||||||| |||||||| ||| ||||||||||  ||||| | ||||||||||||||||||| ||||    
T  27490017 aaccatcatttcaagatttgttgaatcaagccgaggaagagtttggatatgatcatccaatgggt 27490081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 27506748 - 27506812
Alignment:
Q  109 ttaagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatcc 173  Q
    |||| |||||||| |||||||||||||||  |||||||  | ||| |||||||||||||||||||    
T  27506748 ttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcc 27506812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 27507857 - 27507777
Alignment:
Q  155 aatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctcgtttga 234  Q
    ||||||||||||| ||||||| |||| | || ||||||||||||  ||||||  ||||||||||||| |||||||| ||||    
T  27507857 aatttggatatgaccatccaatgggtggtcttacaattccttgtgaagaagatcttttcttagatatcacttctcgcttga 27507777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 27478968 - 27478909
Alignment:
Q  114 ccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatcc 173  Q
    |||||||| |||||||||||||||  |||||||  | ||| |||||||||||||||||||    
T  27478968 ccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcc 27478909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 27486028 - 27485969
Alignment:
Q  114 ccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatcc 173  Q
    |||||||| |||||||||||||||  |||||||  | ||| |||||||||||||||||||    
T  27486028 ccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcc 27485969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 27500410 - 27500319
Alignment:
Q  127 caagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtagc-tcacaattccttgtagagaagacgttttcttaga 217  Q
    |||||||||||||  ||| || | ||||| || |||||||| ||||||| |||| || |||| |||||||| ||||||||| ||||||||||    
T  27500410 caagaattgctgagccaatctgaagaacagttcggatatgaccatccaatgggtggcatcactattccttgcagagaagaccttttcttaga 27500319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 27563431 - 27563348
Alignment:
Q  114 ccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttg 196  Q
    |||| ||| ||||||||| ||||||| ||||||  | ||| | ||||||||||||||||||| |||| | ||||||||||||||    
T  27563431 ccaaacattgtttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatgggtggcctcacaattccttg 27563348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 27424599 - 27424533
Alignment:
Q  114 ccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggt 180  Q
    |||||| || |||||||||||||| |||||| || | ||| ||| ||||||||||||||||| ||||    
T  27424599 ccaaccttcatttcaagaattgctaaatcaatctgaagaagaatatggatatgatcatccaatgggt 27424533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 17970278 - 17970335
Alignment:
Q  38 atgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgat 95  Q
    |||||||||||||||| ||||| |  || | ||||||||||||||||| |||||||||    
T  17970278 atgtgccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgat 17970335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 27497412 - 27497348
Alignment:
Q  109 ttaagccaaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatcc 173  Q
    |||| |||||||| ||||||| | ||| ||| ||||||| ||||| | |||||||||||||||||    
T  27497412 ttaaaccaaccattgtttcaatatttgttgagtcaagctgaggaagagtttggatatgatcatcc 27497348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 229
Target Start/End: Original strand, 55084765 - 55084957
Alignment:
Q  38 atgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgct 137  Q
    |||||||||| || |  |||||||  |||| ||||||| ||||||||| |||||||||  | || ||||  || | ||||||||| |||||||| ||| |    
T  55084765 atgtgccaaaagggtgtcttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgtt 55084864  T
Q  138 gaatcaagcttaggaacaatttggatatgatcatccaacgggtagc-tcacaattccttgtagagaagacgttttcttagatattacttctcg 229  Q
    || ||  ||  ||||| |||||||||| |||||||||| |||| || ||||||||||||| | |||||| ||||||||  |||||||||||||    
T  55084865 gagtcgggcggaggaagaatttggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgttttctttcatattacttctcg 55084957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 38025059 - 38024844
Alignment:
Q  15 ccaagcatcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagc 114  Q
    ||||||||| |||||||  ||| |||| |||||||| || ||||||| ||||| ||||||| ||||||||| |||||| ||  | || || |  || | |    
T  38025059 ccaagcatcatcaaaagctgtgaatgtaccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaac 38024960  T
Q  115 caaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttct 213  Q
    ||| | || |||||| | ||  ||| ||||||  ||||| |||||||||||||||| |||| |||| | ||||| |||||||| | ||||||| |||||     
T  38024959 caagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaagacattttca 38024860  T
Q  214 tagatattacttctcg 229  Q
    | || |||||||||||    
T  38024859 tggaaattacttctcg 38024844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 38031511 - 38031296
Alignment:
Q  15 ccaagcatcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagc 114  Q
    ||||||||| |||||||  ||| |||| |||||||| || ||||||| ||||| ||||||| ||||||||| |||||| ||  | || || |  || | |    
T  38031511 ccaagcatcatcaaaagctgtgaatgtaccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaac 38031412  T
Q  115 caaccatcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttct 213  Q
    ||| | || |||||| | ||  ||| ||||||  ||||| |||||||||||||||| |||| |||| | ||||| |||||||| | ||||||| |||||     
T  38031411 caagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaagacattttca 38031312  T
Q  214 tagatattacttctcg 229  Q
    | || |||||||||||    
T  38031311 tggaaattacttctcg 38031296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 38028816 - 38028736
Alignment:
Q  149 aggaacaatttggatatgatcatccaacgggtagc-tcacaattccttgtagagaagacgttttcttagatattacttctc 228  Q
    ||||| ||||||||||||| ||||||| |||  || ||||||||||||| | |||||||||||||||  ||||||||||||    
T  38028816 aggaagaatttggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctc 38028736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 38043965 - 38044041
Alignment:
Q  121 tcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttg 196  Q
    ||||||||||| ||||||| ||||||  ||||| ||||||||||||||||||||| |||  | ||||||||||||||    
T  38043965 tcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatgggcggcctcacaattccttg 38044041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 229
Target Start/End: Original strand, 50910025 - 50910131
Alignment:
Q  124 tttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatatta 222  Q
    |||||| | ||| |||||||||   ||||| ||||||||||||||||||||| |||| | |||||||||||||| | |||||| || |||||  | ||||    
T  50910025 tttcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatgggtggcctcacaattccttgcacagaagatgtcttcttgcaaatta 50910124  T
Q  223 cttctcg 229  Q
    |||||||    
T  50910125 cttctcg 50910131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 38040131 - 38040051
Alignment:
Q  149 aggaacaatttggatatgatcatccaacgggtagc-tcacaattccttgtagagaagacgttttcttagatattacttctc 228  Q
    ||||| |||| |||||||| ||||||| |||  || ||||||||||||| | |||||||||||||||  ||||||||||||    
T  38040131 aggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctc 38040051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 48840756 - 48840696
Alignment:
Q  155 aatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttctt 214  Q
    ||||||||||||||||||||| |||| | |||||||||||||| | |||||| ||||||||    
T  48840756 aatttggatatgatcatccaatgggtggcctcacaattccttgcacagaagatgttttctt 48840696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 50904953 - 50904761
Alignment:
Q  38 atgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgct 137  Q
    |||||||||||||||| |||||||  || | |||||| |||||||||| |||||||||    || || |  || | |||| | || |||||||| ||| |    
T  50904953 atgtgccaaagggatatcttgcagtgtacgttggagaagaaatgaagcggtttgtgatccatatgtcctacttgaaccaaacttcatttcaagacttgtt 50904854  T
Q  138 gaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctcg 229  Q
    || || |||  ||||  |||| |||||||||||||||| |||| | ||||| |||||||| |||||||| ||||| ||  |||| ||||||||    
T  50904853 gagtcgagcagaggatgaattcggatatgatcatccaatgggtggcctcaccattccttgcagagaagaggtttttttgcatatcacttctcg 50904761  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 38036868 - 38036763
Alignment:
Q  124 tttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtagc-tcacaattccttgtagagaagacgttttcttagatatta 222  Q
    |||||| | ||| ||| ||||||  ||||| |||| |||||||| ||||||| |||  || ||||||||||||| | |||| ||||||||||  ||||||    
T  38036868 tttcaaaatttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacagaatacgttttcttgcatatta 38036769  T
Q  223 cttctc 228  Q
    ||||||    
T  38036768 cttctc 38036763  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 234
Target Start/End: Complemental strand, 1754414 - 1754206
Alignment:
Q  26 caaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatcgtt 125  Q
    ||||||| ||||| | |||||| ||||| || || | ||||| |||||| |||||||||| |||||||||  |  | || |  || | |||| | || ||    
T  1754414 caaaaggcgtggacgagccaaaaggatatctagctgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatt 1754315  T
Q  126 tcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattact 224  Q
    |||| ||||||| ||  || || ||||||| |||| |||||||||||| | |||| | ||||| ||||||||||||||| || ||||||||||||| |||    
T  1754314 tcaaaaattgctaaacaaatctgaggaacagtttgaatatgatcatccgatgggtggtctcactattccttgtagagaa-accttttcttagatatcact 1754216  T
Q  225 tctcgtttga 234  Q
    ||||| ||||    
T  1754215 tctcgcttga 1754206  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 1759335 - 1759422
Alignment:
Q  142 caagcttaggaacaatttggatatgatcatccaacgggtag-ctcacaattccttgtagagaagacgttttcttagatattacttctc 228  Q
    |||||| |||||||||||| |||  | ||||||| |||| | ||||| |||| ||| |||||||| |||||||||||||| |||||||    
T  1759335 caagctgaggaacaatttgaatacaaccatccaatgggtggtctcaccattctttgcagagaagaagttttcttagatatcacttctc 1759422  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 170
Target Start/End: Complemental strand, 1756919 - 1756786
Alignment:
Q  37 gatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgc 136  Q
    ||||| |||||||| || |||||||   ||| ||||||| ||  ||||| |||||||||  |||| || |  || | |||||||||||||||| | |||     
T  1756919 gatgtaccaaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgt 1756820  T
Q  137 tgaatcaagcttaggaacaatttggatatgatca 170  Q
    ||| ||||||| | ||| ||||||||||||||||    
T  1756819 tgagtcaagctgaagaagaatttggatatgatca 1756786  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 21634605 - 21634699
Alignment:
Q  121 tcgtttcaagaattgctgaatcaagcttaggaacaatttggatatgatcatccaacgggtagc-tcacaattccttgtagagaagacgttttctt 214  Q
    ||||||||||| ||||||| ||||||  ||||| |||||||||||||||||| || |||  || ||||||||||||| |  ||||| ||||||||    
T  21634605 tcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatgggcggcttcacaattccttgcaccgaagatgttttctt 21634699  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 21607480 - 21607403
Alignment:
Q  15 ccaagcatcttcaaaaggagtggatgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgt 92  Q
    ||||||||| |||||||  ||| |||| ||||||||||| ||||| | ||||| ||||||| ||||||||| ||||||    
T  21607480 ccaagcatcatcaaaagttgtgaatgtaccaaagggatatcttgcggtatatgttggagagcaaatgaagcggtttgt 21607403  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 21604804 - 21604724
Alignment:
Q  149 aggaacaatttggatatgatcatccaacgggtagc-tcacaattccttgtagagaagacgttttcttagatattacttctc 228  Q
    ||||| |||| |||||||| ||||||| |||  || ||||||||||||| | |||||||||||||||  ||||||||||||    
T  21604804 aggaagaattaggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctc 21604724  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 3073548 - 3073605
Alignment:
Q  38 atgtgccaaagggataccttgcagaatatgctggagaggaaatgaagctgtttgtgat 95  Q
    |||||||||||||||| ||||| |  || | ||||||||||||||||| |||||||||    
T  3073548 atgtgccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgat 3073605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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